GSVIVT01030569001


Description : RNA processing.RNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex.Nhp2/Naf1 non-core component


Gene families : OG0004458 (Archaeplastida) Phylogenetic Tree(s): OG0004458_tree ,
OG_05_0004650 (LandPlants) Phylogenetic Tree(s): OG_05_0004650_tree ,
OG_06_0006012 (SeedPlants) Phylogenetic Tree(s): OG_06_0006012_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01030569001
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00263450 evm_27.TU.AmTr_v1... RNA processing.RNA modification.pseudouridylation.H/ACA... 0.02 Archaeplastida
AT1G03530 NAF1, ATNAF1 nuclear assembly factor 1 0.06 Archaeplastida
Cre10.g467100 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.02 Archaeplastida
Gb_27768 No alias non-core component Nhp2/Naf1 of H/ACA small nucleolar... 0.07 Archaeplastida
LOC_Os05g42300.1 No alias non-core component Nhp2/Naf1 of H/ACA small nucleolar... 0.08 Archaeplastida
MA_10092337g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_127987g0010 No alias non-core component Nhp2/Naf1 of H/ACA small nucleolar... 0.09 Archaeplastida
Mp8g14120.1 No alias non-core component Nhp2/Naf1 of H/ACA small nucleolar... 0.06 Archaeplastida
Pp3c14_14050V3.1 No alias nuclear assembly factor 1 0.02 Archaeplastida
Solyc07g054460.4.1 No alias non-core component Nhp2/Naf1 of H/ACA small nucleolar... 0.12 Archaeplastida
Zm00001e032062_P001 No alias non-core component Nhp2/Naf1 of H/ACA small nucleolar... 0.03 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
BP GO:0042254 ribosome biogenesis IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004177 aminopeptidase activity IEP Neighborhood
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016161 beta-amylase activity IEP Neighborhood
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
CC GO:0034457 Mpp10 complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044452 nucleolar part IEP Neighborhood
InterPro domains Description Start Stop
IPR007504 H/ACA_rnp_Gar1/Naf1 30 173
No external refs found!