Description : RNA processing.RNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex.Nhp2/Naf1 non-core component
Gene families : OG0004458 (Archaeplastida) Phylogenetic Tree(s): OG0004458_tree ,
OG_05_0004650 (LandPlants) Phylogenetic Tree(s): OG_05_0004650_tree ,
OG_06_0006012 (SeedPlants) Phylogenetic Tree(s): OG_06_0006012_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: GSVIVT01030569001 | |
Cluster | HCCA: Cluster_44 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00003p00263450 | evm_27.TU.AmTr_v1... | RNA processing.RNA modification.pseudouridylation.H/ACA... | 0.02 | Archaeplastida | |
AT1G03530 | NAF1, ATNAF1 | nuclear assembly factor 1 | 0.06 | Archaeplastida | |
Cre10.g467100 | No alias | RNA processing.RNA modification.pseudouridylation.H/ACA... | 0.02 | Archaeplastida | |
Gb_27768 | No alias | non-core component Nhp2/Naf1 of H/ACA small nucleolar... | 0.07 | Archaeplastida | |
LOC_Os05g42300.1 | No alias | non-core component Nhp2/Naf1 of H/ACA small nucleolar... | 0.08 | Archaeplastida | |
MA_10092337g0010 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
MA_127987g0010 | No alias | non-core component Nhp2/Naf1 of H/ACA small nucleolar... | 0.09 | Archaeplastida | |
Mp8g14120.1 | No alias | non-core component Nhp2/Naf1 of H/ACA small nucleolar... | 0.06 | Archaeplastida | |
Pp3c14_14050V3.1 | No alias | nuclear assembly factor 1 | 0.02 | Archaeplastida | |
Solyc07g054460.4.1 | No alias | non-core component Nhp2/Naf1 of H/ACA small nucleolar... | 0.12 | Archaeplastida | |
Zm00001e032062_P001 | No alias | non-core component Nhp2/Naf1 of H/ACA small nucleolar... | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEA | Interproscan |
BP | GO:0042254 | ribosome biogenesis | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000272 | polysaccharide catabolic process | IEP | Neighborhood |
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003743 | translation initiation factor activity | IEP | Neighborhood |
MF | GO:0004177 | aminopeptidase activity | IEP | Neighborhood |
MF | GO:0004809 | tRNA (guanine-N2-)-methyltransferase activity | IEP | Neighborhood |
MF | GO:0005488 | binding | IEP | Neighborhood |
MF | GO:0005515 | protein binding | IEP | Neighborhood |
CC | GO:0005634 | nucleus | IEP | Neighborhood |
CC | GO:0005732 | small nucleolar ribonucleoprotein complex | IEP | Neighborhood |
CC | GO:0005737 | cytoplasm | IEP | Neighborhood |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Neighborhood |
BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
BP | GO:0006396 | RNA processing | IEP | Neighborhood |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Neighborhood |
MF | GO:0008168 | methyltransferase activity | IEP | Neighborhood |
MF | GO:0008170 | N-methyltransferase activity | IEP | Neighborhood |
MF | GO:0008173 | RNA methyltransferase activity | IEP | Neighborhood |
MF | GO:0008175 | tRNA methyltransferase activity | IEP | Neighborhood |
BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
MF | GO:0016160 | amylase activity | IEP | Neighborhood |
MF | GO:0016161 | beta-amylase activity | IEP | Neighborhood |
MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Neighborhood |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Neighborhood |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Neighborhood |
CC | GO:0019867 | outer membrane | IEP | Neighborhood |
MF | GO:0030145 | manganese ion binding | IEP | Neighborhood |
CC | GO:0034457 | Mpp10 complex | IEP | Neighborhood |
BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0044452 | nucleolar part | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007504 | H/ACA_rnp_Gar1/Naf1 | 30 | 173 |
No external refs found! |