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  5. GSVIVT01030578001

GSVIVT01030578001


Description : Vesicle trafficking.SNARE target membrane recognition and fusion complexes.Qa-type SNARE components.SYP1-group protein


Gene families : OG0000372 (Archaeplastida) Phylogenetic Tree(s): OG0000372_tree ,
OG_05_0000804 (LandPlants) Phylogenetic Tree(s): OG_05_0000804_tree ,
OG_06_0000894 (SeedPlants) Phylogenetic Tree(s): OG_06_0000894_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01030578001
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00050990 evm_27.TU.AmTr_v1... Vesicle trafficking.SNARE target membrane recognition... 0.03 Archaeplastida
AMTR_s00103p00119740 evm_27.TU.AmTr_v1... Vesicle trafficking.SNARE target membrane recognition... 0.03 Archaeplastida
AMTR_s00111p00136390 evm_27.TU.AmTr_v1... Vesicle trafficking.SNARE target membrane recognition... 0.07 Archaeplastida
AT1G11250 SYP125, ATSYP125 syntaxin of plants 125 0.06 Archaeplastida
AT1G61290 ATSYP124, SYP124 syntaxin of plants 124 0.03 Archaeplastida
AT3G03800 ATSYP131, SYP131 syntaxin of plants 131 0.11 Archaeplastida
AT4G03330 SYP123, ATSYP123 syntaxin of plants 123 0.08 Archaeplastida
LOC_Os02g11890.1 No alias SYP1-group Qa-type SNARE component 0.05 Archaeplastida
LOC_Os03g57310.1 No alias SYP1-group Qa-type SNARE component 0.04 Archaeplastida
LOC_Os06g07200.1 No alias SYP1-group Qa-type SNARE component 0.03 Archaeplastida
LOC_Os06g39050.1 No alias SYP1-group Qa-type SNARE component 0.09 Archaeplastida
Pp3c14_10430V3.1 No alias syntaxin of plants 124 0.04 Archaeplastida
Pp3c1_23940V3.1 No alias syntaxin of plants 124 0.02 Archaeplastida
Smo74098 No alias Vesicle trafficking.SNARE target membrane recognition... 0.03 Archaeplastida
Solyc06g053760.3.1 No alias Qa-SNARE component KNOLLE of SNARE cell-plate vesicle... 0.02 Archaeplastida
Solyc10g008570.3.1 No alias SYP1-group Qa-type SNARE component 0.03 Archaeplastida
Solyc12g005580.2.1 No alias SYP1-group Qa-type SNARE component 0.07 Archaeplastida
Zm00001e011479_P001 No alias SYP1-group Qa-type SNARE component 0.02 Archaeplastida
Zm00001e030621_P001 No alias SYP1-group Qa-type SNARE component 0.04 Archaeplastida
Zm00001e037387_P002 No alias SYP1-group Qa-type SNARE component 0.05 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0003006 developmental process involved in reproduction IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
BP GO:0009790 embryo development IEP Neighborhood
BP GO:0009793 embryo development ending in seed dormancy IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016049 cell growth IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
CC GO:0016469 proton-transporting two-sector ATPase complex IEP Neighborhood
CC GO:0016471 vacuolar proton-transporting V-type ATPase complex IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
MF GO:0030570 pectate lyase activity IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
CC GO:0033176 proton-transporting V-type ATPase complex IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0040007 growth IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044437 vacuolar part IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR006011 Syntaxin_N 35 240
IPR000727 T_SNARE_dom 243 293
No external refs found!