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  5. AMTR_s00044p00145070

AMTR_s00044p00145070 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00044.146

Description : Pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000198 (Archaeplastida) Phylogenetic Tree(s): OG0000198_tree ,
OG_05_0000086 (LandPlants) Phylogenetic Tree(s): OG_05_0000086_tree ,
OG_06_0011312 (SeedPlants) Phylogenetic Tree(s): OG_06_0011312_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00044p00145070
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
AT2G17525 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT4G01400 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.03 Archaeplastida
AT5G18475 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Archaeplastida
Gb_38400 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 205 237
IPR002885 Pentatricopeptide_repeat 563 605
IPR002885 Pentatricopeptide_repeat 311 359
IPR002885 Pentatricopeptide_repeat 241 288
IPR002885 Pentatricopeptide_repeat 489 537
IPR002885 Pentatricopeptide_repeat 425 448
IPR002885 Pentatricopeptide_repeat 466 486
IPR002885 Pentatricopeptide_repeat 109 137
IPR002885 Pentatricopeptide_repeat 384 412
No external refs found!