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Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.group-II intron splicing.CRS2-CAF splicing factor complexes.CRS2 component
Gene families : OG0001167 (Archaeplastida) Phylogenetic Tree(s): OG0001167_tree ,
OG_05_0001323 (LandPlants) Phylogenetic Tree(s): OG_05_0001323_tree ,
OG_06_0000992 (SeedPlants) Phylogenetic Tree(s): OG_06_0000992_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01031009001 | |
| Cluster | HCCA: Cluster_52 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Gb_12986 | No alias | component CRS2 of CRS2-CAF plastidial RNA splicing... | 0.05 | Archaeplastida | |
| LOC_Os01g04130.1 | No alias | Chloroplastic group IIB intron splicing facilitator... | 0.05 | Archaeplastida | |
| Pp3c4_11200V3.1 | No alias | Peptidyl-tRNA hydrolase family protein | 0.03 | Archaeplastida | |
| Smo71323 | No alias | Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004045 | aminoacyl-tRNA hydrolase activity | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0003333 | amino acid transmembrane transport | IEP | Neighborhood |
| MF | GO:0004640 | phosphoribosylanthranilate isomerase activity | IEP | Neighborhood |
| BP | GO:0006352 | DNA-templated transcription, initiation | IEP | Neighborhood |
| BP | GO:0006568 | tryptophan metabolic process | IEP | Neighborhood |
| BP | GO:0006576 | cellular biogenic amine metabolic process | IEP | Neighborhood |
| BP | GO:0006586 | indolalkylamine metabolic process | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0006865 | amino acid transport | IEP | Neighborhood |
| BP | GO:0009072 | aromatic amino acid family metabolic process | IEP | Neighborhood |
| BP | GO:0009308 | amine metabolic process | IEP | Neighborhood |
| BP | GO:0015711 | organic anion transport | IEP | Neighborhood |
| BP | GO:0015849 | organic acid transport | IEP | Neighborhood |
| MF | GO:0016860 | intramolecular oxidoreductase activity | IEP | Neighborhood |
| MF | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0042430 | indole-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0044106 | cellular amine metabolic process | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| BP | GO:0046942 | carboxylic acid transport | IEP | Neighborhood |
| BP | GO:0098656 | anion transmembrane transport | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| BP | GO:1901605 | alpha-amino acid metabolic process | IEP | Neighborhood |
| BP | GO:1903825 | organic acid transmembrane transport | IEP | Neighborhood |
| BP | GO:1905039 | carboxylic acid transmembrane transport | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001328 | Pept_tRNA_hydro | 53 | 231 |
| No external refs found! |