GSVIVT01031037001

Description : KH domain-containing protein At4g18375 OS=Arabidopsis thaliana

Gene families : OG0000393 (Archaeplastida) Phylogenetic Tree(s): OG0000393_tree ,
OG_05_0014186 (LandPlants) Phylogenetic Tree(s): OG_05_0014186_tree ,
OG_06_0014109 (SeedPlants) Phylogenetic Tree(s): OG_06_0014109_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01031037001
Cluster	HCCA: Cluster_196

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00265700	evm_27.TU.AmTr_v1...	RNA-binding KH domain-containing protein RCF3...	0.02	Archaeplastida
AMTR_s00092p00116010	evm_27.TU.AmTr_v1...	KH domain-containing protein At4g18375 OS=Arabidopsis thaliana	0.02	Archaeplastida
AT2G03110	No alias	RNA binding;nucleic acid binding	0.03	Archaeplastida
Cre17.g707400	No alias	No description available	0.02	Archaeplastida
Gb_03724	No alias	RNA-binding KH domain-containing protein RCF3...	0.02	Archaeplastida
Gb_18830	No alias	RNA-binding KH domain-containing protein RCF3...	0.03	Archaeplastida
Gb_31686	No alias	RNA-binding KH domain-containing protein RCF3...	0.05	Archaeplastida
Gb_37521	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os06g23460.1	No alias	RNA-binding KH domain-containing protein RCF3...	0.05	Archaeplastida
MA_10430861g0010	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.04	Archaeplastida
MA_10433640g0010	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.03	Archaeplastida
MA_108374g0010	No alias	KH domain-containing protein HEN4 OS=Arabidopsis...	0.03	Archaeplastida
MA_3715g0020	No alias	RNA-binding KH domain-containing protein RCF3...	0.05	Archaeplastida
MA_6622g0010	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.08	Archaeplastida
Pp3c14_13560V3.1	No alias	RNA-binding KH domain-containing protein	0.03	Archaeplastida
Solyc02g067210.3.1	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.04	Archaeplastida
Solyc04g077060.3.1	No alias	RNA-binding KH domain-containing protein RCF3...	0.07	Archaeplastida
Solyc05g007810.3.1	No alias	RNA-binding KH domain-containing protein RCF3...	0.07	Archaeplastida
Solyc08g048500.3.1	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.05	Archaeplastida
Solyc12g055780.3.1	No alias	RNA-binding KH domain-containing protein RCF3...	0.03	Archaeplastida
Zm00001e001825_P001	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.02	Archaeplastida
Zm00001e004486_P005	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e037033_P001	No alias	RNA-binding KH domain-containing protein RCF3...	0.08	Archaeplastida
Zm00001e039986_P003	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003916	DNA topoisomerase activity	IEP	Neighborhood
MF	GO:0003917	DNA topoisomerase type I activity	IEP	Neighborhood
MF	GO:0004518	nuclease activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
MF	GO:0004725	protein tyrosine phosphatase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005694	chromosome	IEP	Neighborhood
BP	GO:0006265	DNA topological change	IEP	Neighborhood
BP	GO:0006470	protein dephosphorylation	IEP	Neighborhood
BP	GO:0009890	negative regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0009892	negative regulation of metabolic process	IEP	Neighborhood
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010629	negative regulation of gene expression	IEP	Neighborhood
BP	GO:0016311	dephosphorylation	IEP	Neighborhood
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Neighborhood
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0045892	negative regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0048523	negative regulation of cellular process	IEP	Neighborhood
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051253	negative regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0071103	DNA conformation change	IEP	Neighborhood
BP	GO:1902679	negative regulation of RNA biosynthetic process	IEP	Neighborhood
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR004088	KH_dom_type_1	550	609
IPR004088	KH_dom_type_1	316	365
IPR004088	KH_dom_type_1	158	225
IPR004088	KH_dom_type_1	397	465
IPR004088	KH_dom_type_1	47	96

External Links

No external refs found!

GSVIVT01031037001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation