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  5. AMTR_s00044p00151840

AMTR_s00044p00151840 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00044.157

Description : Pentatricopeptide repeat-containing protein At4g14190, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0007087 (Archaeplastida) Phylogenetic Tree(s): OG0007087_tree ,
OG_05_0017272 (LandPlants) Phylogenetic Tree(s): OG_05_0017272_tree ,
OG_06_0016779 (SeedPlants) Phylogenetic Tree(s): OG_06_0016779_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00044p00151840
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01032259001 No alias Pentatricopeptide repeat-containing protein At3g42630... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Neighborhood
BP GO:0006081 cellular aldehyde metabolic process IEP Neighborhood
BP GO:0006098 pentose-phosphate shunt IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006739 NADP metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0051156 glucose 6-phosphate metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 173 220
IPR002885 Pentatricopeptide_repeat 282 310
IPR002885 Pentatricopeptide_repeat 143 171
No external refs found!