GSVIVT01031232001

Description : Protein biosynthesis.organelle translation machineries.translation termination.PrfB-type peptide chain release factor

Gene families : OG0001906 (Archaeplastida) Phylogenetic Tree(s): OG0001906_tree ,
OG_05_0008412 (LandPlants) Phylogenetic Tree(s): OG_05_0008412_tree ,
OG_06_0009790 (SeedPlants) Phylogenetic Tree(s): OG_06_0009790_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01031232001
Cluster	HCCA: Cluster_46

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00057p00025530	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.02	Archaeplastida
Gb_09148	No alias	PrfB-type translation peptide chain release factor	0.03	Archaeplastida
Smo75160	No alias	Protein biosynthesis.organelle translation...	0.04	Archaeplastida
Solyc01g100420.3.1	No alias	PrfB-type translation peptide chain release factor	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006415	translational termination	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022411	cellular component disassembly	None	Extended
BP	GO:0032984	protein-containing complex disassembly	None	Extended
BP	GO:0043624	cellular protein complex disassembly	None	Extended
BP	GO:0043933	protein-containing complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	Neighborhood
MF	GO:0003972	RNA ligase (ATP) activity	IEP	Neighborhood
MF	GO:0004045	aminoacyl-tRNA hydrolase activity	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
BP	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	IEP	Neighborhood
BP	GO:0008033	tRNA processing	IEP	Neighborhood
BP	GO:0008380	RNA splicing	IEP	Neighborhood
MF	GO:0008452	RNA ligase activity	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
MF	GO:0031072	heat shock protein binding	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
CC	GO:0043190	ATP-binding cassette (ABC) transporter complex	IEP	Neighborhood
CC	GO:0044459	plasma membrane part	IEP	Neighborhood
MF	GO:0051082	unfolded protein binding	IEP	Neighborhood
MF	GO:0051536	iron-sulfur cluster binding	IEP	Neighborhood
MF	GO:0051540	metal cluster binding	IEP	Neighborhood
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Neighborhood
CC	GO:0098533	ATPase dependent transmembrane transport complex	IEP	Neighborhood
CC	GO:0098797	plasma membrane protein complex	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
CC	GO:1902495	transmembrane transporter complex	IEP	Neighborhood
CC	GO:1904949	ATPase complex	IEP	Neighborhood
CC	GO:1990351	transporter complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000352	Pep_chain_release_fac_I_II	328	435
IPR005139	PCRF	129	316

External Links

No external refs found!

GSVIVT01031232001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation