GSVIVT01031241001


Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.KNOX transcription factor


Gene families : OG0000263 (Archaeplastida) Phylogenetic Tree(s): OG0000263_tree ,
OG_05_0000128 (LandPlants) Phylogenetic Tree(s): OG_05_0000128_tree ,
OG_06_0003089 (SeedPlants) Phylogenetic Tree(s): OG_06_0003089_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01031241001
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00178300 evm_27.TU.AmTr_v1... Homeobox protein HD1 OS=Brassica napus 0.04 Archaeplastida
AMTR_s00045p00169620 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
AMTR_s00085p00165180 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
AT1G23380 KNAT6, KNAT6L, KNAT6S KNOTTED1-like homeobox gene 6 0.05 Archaeplastida
AT1G62360 BUM1, SHL, STM,... KNOX/ELK homeobox transcription factor 0.04 Archaeplastida
AT1G70510 KNAT2, ATK1 KNOTTED-like from Arabidopsis thaliana 2 0.03 Archaeplastida
AT4G08150 BP, BP1, KNAT1 KNOTTED-like from Arabidopsis thaliana 0.06 Archaeplastida
AT5G25220 KNAT3 KNOTTED1-like homeobox gene 3 0.02 Archaeplastida
Gb_00573 No alias transcription factor (KNOX) 0.04 Archaeplastida
Gb_10887 No alias transcription factor (KNOX) 0.05 Archaeplastida
Gb_14470 No alias transcription factor (KNOX) 0.03 Archaeplastida
LOC_Os01g19694.1 No alias transcription factor (KNOX) 0.03 Archaeplastida
LOC_Os03g51690.2 No alias transcription factor (KNOX) 0.03 Archaeplastida
LOC_Os05g03884.1 No alias transcription factor (KNOX) 0.06 Archaeplastida
LOC_Os07g03770.1 No alias transcription factor (KNOX) 0.03 Archaeplastida
LOC_Os08g19650.1 No alias transcription factor (KNOX) 0.03 Archaeplastida
Pp3c19_5610V3.1 No alias No annotation 0.03 Archaeplastida
Pp3c6_1550V3.1 No alias KNOTTED1-like homeobox gene 3 0.02 Archaeplastida
Smo159366 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
Solyc04g077210.3.1 No alias transcription factor (KNOX) 0.06 Archaeplastida
Solyc05g005090.4.1 No alias transcription factor (KNOX) 0.04 Archaeplastida
Solyc12g010410.3.1 No alias transcription factor (KNOX) 0.02 Archaeplastida
Zm00001e005170_P001 No alias transcription factor (KNOX) 0.02 Archaeplastida
Zm00001e005545_P001 No alias transcription factor (KNOX) 0.05 Archaeplastida
Zm00001e005547_P001 No alias transcription factor (KNOX) 0.02 Archaeplastida
Zm00001e005825_P002 No alias transcription factor (KNOX) 0.02 Archaeplastida
Zm00001e011538_P001 No alias transcription factor (KNOX) 0.07 Archaeplastida
Zm00001e017489_P001 No alias transcription factor (KNOX) 0.06 Archaeplastida
Zm00001e027562_P001 No alias transcription factor (KNOX) 0.08 Archaeplastida
Zm00001e029453_P001 No alias transcription factor (KNOX) 0.04 Archaeplastida
Zm00001e032761_P001 No alias transcription factor (KNOX) 0.03 Archaeplastida
Zm00001e039044_P001 No alias transcription factor (KNOX) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005319 lipid transporter activity IEP Neighborhood
MF GO:0005337 nucleoside transmembrane transporter activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006869 lipid transport IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0015858 nucleoside transport IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016759 cellulose synthase activity IEP Neighborhood
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
BP GO:0030243 cellulose metabolic process IEP Neighborhood
BP GO:0030244 cellulose biosynthetic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0120009 intermembrane lipid transfer IEP Neighborhood
MF GO:0120013 intermembrane lipid transfer activity IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1901264 carbohydrate derivative transport IEP Neighborhood
BP GO:1901642 nucleoside transmembrane transport IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR005540 KNOX1 51 92
IPR005541 KNOX2 101 147
IPR008422 Homeobox_KN_domain 234 273
IPR005539 ELK_dom 194 215
No external refs found!