GSVIVT01031250001

Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase

Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0114561 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0092793 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01031250001
Cluster	HCCA: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00085870	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.04	Archaeplastida
AMTR_s00007p00264370	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.04	Archaeplastida
AMTR_s00007p00264470	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
AMTR_s00027p00247950	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
AMTR_s00056p00166920	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.04	Archaeplastida
AMTR_s00123p00050980	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
AT1G05310	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
AT1G11370	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT2G21610	ATPE11, PE11	pectinesterase 11	0.03	Archaeplastida
AT2G36710	No alias	Pectin lyase-like superfamily protein	0.06	Archaeplastida
AT2G47280	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
AT5G18990	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
AT5G19730	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT5G26810	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
GSVIVT01015290001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.04	Archaeplastida
GSVIVT01028170001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
GSVIVT01034985001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.06	Archaeplastida
Gb_01459	No alias	pectin methylesterase	0.02	Archaeplastida
Gb_01460	No alias	pectin methylesterase	0.03	Archaeplastida
Gb_17798	No alias	pectin methylesterase	0.03	Archaeplastida
Gb_27225	No alias	pectin methylesterase	0.02	Archaeplastida
LOC_Os05g44600.1	No alias	pectin methylesterase	0.05	Archaeplastida
LOC_Os07g46190.1	No alias	pectin methylesterase	0.02	Archaeplastida
LOC_Os11g45720.1	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os11g45730.1	No alias	pectin methylesterase	0.04	Archaeplastida
MA_10434773g0010	No alias	pectin methylesterase	0.02	Archaeplastida
MA_181657g0020	No alias	pectin methylesterase	0.03	Archaeplastida
MA_19196g0010	No alias	pectin methylesterase	0.03	Archaeplastida
MA_304854g0010	No alias	pectin methylesterase	0.04	Archaeplastida
MA_6149868g0010	No alias	pectin methylesterase	0.03	Archaeplastida
MA_66089g0010	No alias	pectin methylesterase	0.04	Archaeplastida
MA_6780346g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_87592g0010	No alias	pectin methylesterase	0.03	Archaeplastida
Mp3g01170.1	No alias	pectin methylesterase	0.02	Archaeplastida
Mp4g01190.1	No alias	pectin methylesterase	0.03	Archaeplastida
Pp3c10_18650V3.1	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
Pp3c10_20120V3.1	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
Pp3c12_24000V3.1	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
Pp3c16_19430V3.1	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
Pp3c18_13190V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c19_8330V3.1	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
Pp3c1_6010V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c25_3840V3.1	No alias	Pectin lyase-like superfamily protein	0.05	Archaeplastida
Pp3c3_30560V3.1	No alias	Pectin lyase-like superfamily protein	0.05	Archaeplastida
Pp3c3_32350V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c3_35240V3.1	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
Pp3c5_12770V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c5_12820V3.1	No alias	Pectin lyase-like superfamily protein	0.05	Archaeplastida
Pp3c8_2010V3.1	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
Pp3c8_460V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Smo73566	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
Smo76951	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
Smo81583	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.05	Archaeplastida
Solyc01g079180.4.1	No alias	pectin methylesterase	0.03	Archaeplastida
Solyc01g109740.3.1	No alias	pectin methylesterase	0.06	Archaeplastida
Solyc05g053680.1.1	No alias	pectin methylesterase	0.04	Archaeplastida
Solyc07g065350.2.1	No alias	pectin methylesterase	0.03	Archaeplastida
Solyc07g065360.2.1	No alias	pectin methylesterase	0.03	Archaeplastida
Solyc09g091730.4.1	No alias	pectin methylesterase	0.02	Archaeplastida
Solyc12g099230.2.1	No alias	pectin methylesterase	0.03	Archaeplastida
Zm00001e004804_P001	No alias	pectin methylesterase	0.02	Archaeplastida
Zm00001e020795_P001	No alias	pectin methylesterase	0.04	Archaeplastida
Zm00001e027944_P002	No alias	pectin methylesterase	0.03	Archaeplastida
Zm00001e035522_P001	No alias	pectin methylesterase	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030599	pectinesterase activity	IEA	Interproscan
BP	GO:0042545	cell wall modification	IEA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	Neighborhood
MF	GO:0004143	diacylglycerol kinase activity	IEP	Neighborhood
MF	GO:0005048	signal sequence binding	IEP	Neighborhood
BP	GO:0006621	protein retention in ER lumen	IEP	Neighborhood
BP	GO:0007165	signal transduction	IEP	Neighborhood
BP	GO:0007205	protein kinase C-activating G-protein coupled receptor signaling pathway	IEP	Neighborhood
MF	GO:0008107	galactoside 2-alpha-L-fucosyltransferase activity	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0008171	O-methyltransferase activity	IEP	Neighborhood
MF	GO:0008417	fucosyltransferase activity	IEP	Neighborhood
MF	GO:0008483	transaminase activity	IEP	Neighborhood
MF	GO:0009055	electron transfer activity	IEP	Neighborhood
MF	GO:0010333	terpene synthase activity	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Neighborhood
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Neighborhood
MF	GO:0031127	alpha-(1,2)-fucosyltransferase activity	IEP	Neighborhood
BP	GO:0032507	maintenance of protein location in cell	IEP	Neighborhood
MF	GO:0033218	amide binding	IEP	Neighborhood
BP	GO:0035437	maintenance of protein localization in endoplasmic reticulum	IEP	Neighborhood
BP	GO:0035556	intracellular signal transduction	IEP	Neighborhood
MF	GO:0042277	peptide binding	IEP	Neighborhood
BP	GO:0042546	cell wall biogenesis	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
BP	GO:0045185	maintenance of protein location	IEP	Neighborhood
MF	GO:0046923	ER retention sequence binding	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050794	regulation of cellular process	IEP	Neighborhood
BP	GO:0051235	maintenance of location	IEP	Neighborhood
BP	GO:0051651	maintenance of location in cell	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0065008	regulation of biological quality	IEP	Neighborhood
BP	GO:0072595	maintenance of protein localization in organelle	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	57	207
IPR000070	Pectinesterase_cat	248	535

External Links

No external refs found!

GSVIVT01031250001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation