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  5. GSVIVT01031333001

GSVIVT01031333001


Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor


Gene families : OG0002515 (Archaeplastida) Phylogenetic Tree(s): OG0002515_tree ,
OG_05_0001893 (LandPlants) Phylogenetic Tree(s): OG_05_0001893_tree ,
OG_06_0001162 (SeedPlants) Phylogenetic Tree(s): OG_06_0001162_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01031333001
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00095p00172370 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
AT2G28700 AGL46 AGAMOUS-like 46 0.03 Archaeplastida
AT3G05860 No alias MADS-box transcription factor family protein 0.05 Archaeplastida
AT5G26630 No alias MADS-box transcription factor family protein 0.05 Archaeplastida
LOC_Os01g18420.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os01g18440.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os03g38610.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os04g24800.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os04g24810.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Solyc01g102260.3.1 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Zm00001e040374_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005337 nucleoside transmembrane transporter activity IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0008519 ammonium transmembrane transporter activity IEP Neighborhood
BP GO:0009143 nucleoside triphosphate catabolic process IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
BP GO:0015696 ammonium transport IEP Neighborhood
BP GO:0015858 nucleoside transport IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:1901264 carbohydrate derivative transport IEP Neighborhood
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Neighborhood
BP GO:1901642 nucleoside transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 11 51
No external refs found!