GSVIVT01031345001

Description : Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana

Gene families : OG0027242 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0026835 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0025280 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01031345001
Cluster	HCCA: Cluster_35

Target	Alias	Description	ECC score	Gene Family Method	Actions
AT3G56550	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003678	DNA helicase activity	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
BP	GO:0006260	DNA replication	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	145	172
IPR002885	Pentatricopeptide_repeat	349	370
IPR002885	Pentatricopeptide_repeat	274	321
IPR002885	Pentatricopeptide_repeat	173	220
IPR032867	DYW_dom	447	575

External Links

No external refs found!

GSVIVT01031345001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation