Description : External stimuli red light.PHY phytochrome photoreceptor

Gene families : OG0000908 (Archaeplastida) Phylogenetic Tree(s): OG0000908_tree ,
OG_05_0000972 (LandPlants) Phylogenetic Tree(s): OG_05_0000972_tree ,
OG_06_0003182 (SeedPlants) Phylogenetic Tree(s): OG_06_0003182_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: GSVIVT01031354001
Cluster HCCA: Cluster_280

Target Alias Description ECC score Gene Family Method Actions
AT5G35840 PHYC phytochrome C 0.02 Archaeplastida
Cpa|evm.model.tig00020510.131 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.01 Archaeplastida
GSVIVT01034989001 No alias External stimuli red light.PHY... 0.05 Archaeplastida
Zm00001e005702_P001 No alias phytochrome photoreceptor (PHY) 0.06 Archaeplastida
Zm00001e012154_P002 No alias phytochrome photoreceptor (PHY) 0.03 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0009584 detection of visible light IEA Interproscan
BP GO:0018298 protein-chromophore linkage IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR013767 PAS_fold 749 871
IPR013767 PAS_fold 619 733
IPR003594 HATPase_C 1005 1115
IPR013654 PAS_2 68 184
IPR003661 HisK_dim/P 896 952
IPR003018 GAF 217 400
IPR013515 Phytochrome_cen-reg 413 588
No external refs found!