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  5. GSVIVT01031365001

GSVIVT01031365001


Description : Cell cycle.interphase.DNA replication.elongation.DNA polymerase epsilon complex.POL2/POLE1 catalytic component


Gene families : OG0003279 (Archaeplastida) Phylogenetic Tree(s): OG0003279_tree ,
OG_05_0003575 (LandPlants) Phylogenetic Tree(s): OG_05_0003575_tree ,
OG_06_0002633 (SeedPlants) Phylogenetic Tree(s): OG_06_0002633_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01031365001
Cluster HCCA: Cluster_236

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00175760 evm_27.TU.AmTr_v1... Cell cycle.interphase.DNA replication.elongation.DNA... 0.05 Archaeplastida
AMTR_s00040p00177210 evm_27.TU.AmTr_v1... Cell cycle.interphase.DNA replication.elongation.DNA... 0.05 Archaeplastida
AT1G08260 TIL1, POL2A,... DNA polymerase epsilon catalytic subunit 0.04 Archaeplastida
Cpa|evm.model.tig00000970.30 No alias Cell cycle.interphase.DNA replication.elongation.DNA... 0.01 Archaeplastida
Cre03.g179961 No alias Cell cycle.interphase.DNA replication.elongation.DNA... 0.08 Archaeplastida
Gb_06608 No alias catalytic component POL2/POLE1 of DNA polymerase epsilon complex 0.06 Archaeplastida
MA_10433902g0010 No alias DNA polymerase epsilon catalytic subunit A... 0.03 Archaeplastida
MA_80165g0010 No alias catalytic component POL2/POLE1 of DNA polymerase epsilon complex 0.02 Archaeplastida
MA_88369g0010 No alias catalytic component POL2/POLE1 of DNA polymerase epsilon complex 0.02 Archaeplastida
Pp3c13_4500V3.1 No alias DNA polymerase epsilon catalytic subunit 0.02 Archaeplastida
Smo442263 No alias Cell cycle.interphase.DNA replication.elongation.DNA... 0.02 Archaeplastida
Solyc11g067140.2.1 No alias catalytic component POL2/POLE1 of DNA polymerase epsilon complex 0.05 Archaeplastida
Zm00001e014636_P002 No alias catalytic component POL2/POLE1 of DNA polymerase epsilon complex 0.11 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000724 double-strand break repair via homologous recombination IEP Neighborhood
BP GO:0000725 recombinational repair IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0004003 ATP-dependent DNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0043138 3'-5' DNA helicase activity IEP Neighborhood
MF GO:0043140 ATP-dependent 3'-5' DNA helicase activity IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR006134 DNA-dir_DNA_pol_B_multi_dom 1235 1539
IPR013697 DNA_pol_e_suA_C 2074 2410
IPR006133 DNA-dir_DNA_pol_B_exonuc 73 456
No external refs found!