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  5. GSVIVT01031410001

GSVIVT01031410001


Description : Chromatin organisation.chromatin remodeling complexes.ATPase core components.Rad5/16-like group.Rad5 chromatin remodeling factor


Gene families : OG0000572 (Archaeplastida) Phylogenetic Tree(s): OG0000572_tree ,
OG_05_0003266 (LandPlants) Phylogenetic Tree(s): OG_05_0003266_tree ,
OG_06_0004582 (SeedPlants) Phylogenetic Tree(s): OG_06_0004582_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01031410001
Cluster HCCA: Cluster_236

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00226100 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
AT1G50410 No alias SNF2 domain-containing protein / helicase... 0.04 Archaeplastida
AT3G20010 No alias SNF2 domain-containing protein / helicase... 0.07 Archaeplastida
Cre14.g614400 No alias Chromatin organisation.chromatin remodeling... 0.01 Archaeplastida
LOC_Os02g32570.1 No alias chromatin remodeling factor (Rad5) 0.06 Archaeplastida
LOC_Os04g09800.1 No alias chromatin remodeling factor (Rad5) 0.03 Archaeplastida
LOC_Os08g08220.1 No alias chromatin remodeling factor (Rad5). chromatin remodeling... 0.03 Archaeplastida
MA_218767g0010 No alias DNA repair protein RAD5A OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_4534g0010 No alias Helicase-like transcription factor CHR28 OS=Arabidopsis... 0.02 Archaeplastida
Pp3c24_8230V3.1 No alias DNA/RNA helicase protein 0.05 Archaeplastida
Smo429547 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Solyc02g050280.4.1 No alias chromatin remodeling factor (Ris1) 0.04 Archaeplastida
Solyc11g066790.2.1 No alias chromatin remodeling factor (Rad5) 0.09 Archaeplastida
Zm00001e022169_P001 No alias chromatin remodeling factor (Rad5) 0.05 Archaeplastida
Zm00001e022645_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004000 adenosine deaminase activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006382 adenosine to inosine editing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008081 phosphoric diester hydrolase activity IEP Neighborhood
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016553 base conversion or substitution editing IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 865 972
IPR014905 HIRAN 115 219
IPR000330 SNF2_N 346 735
No external refs found!