Description : DNA damage response.DNA repair mechanisms.base excision repair (BER).DNA ligase (LIG1)
Gene families : OG0002154 (Archaeplastida) Phylogenetic Tree(s): OG0002154_tree ,
OG_05_0006392 (LandPlants) Phylogenetic Tree(s): OG_05_0006392_tree ,
OG_06_0007456 (SeedPlants) Phylogenetic Tree(s): OG_06_0007456_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: GSVIVT01031470001 | |
Cluster | HCCA: Cluster_236 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G08130 | ATLIG1, LIG1 | DNA ligase 1 | 0.07 | Archaeplastida | |
Cpa|evm.model.tig00000754.31 | No alias | DNA ligase 1 OS=Arabidopsis thaliana | 0.02 | Archaeplastida | |
Cre07.g325716 | No alias | DNA damage response.DNA repair mechanisms.base excision... | 0.02 | Archaeplastida | |
LOC_Os10g34750.1 | No alias | DNA replication DNA ligase (LIG1). DNA ligase (LIG1) | 0.04 | Archaeplastida | |
MA_10427015g0010 | No alias | DNA ligase 6 OS=Arabidopsis thaliana... | 0.03 | Archaeplastida | |
Solyc11g066370.2.1 | No alias | DNA replication DNA ligase (LIG1). DNA ligase (LIG1) | 0.02 | Archaeplastida | |
Zm00001e004508_P002 | No alias | DNA replication DNA ligase (LIG1). DNA ligase (LIG1) | 0.03 | Archaeplastida | |
Zm00001e020139_P002 | No alias | DNA ligase (LIG6) | 0.05 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003910 | DNA ligase (ATP) activity | IEA | Interproscan |
BP | GO:0006281 | DNA repair | IEA | Interproscan |
BP | GO:0006310 | DNA recombination | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000151 | ubiquitin ligase complex | IEP | Neighborhood |
CC | GO:0000152 | nuclear ubiquitin ligase complex | IEP | Neighborhood |
MF | GO:0003678 | DNA helicase activity | IEP | Neighborhood |
MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | Neighborhood |
MF | GO:0004003 | ATP-dependent DNA helicase activity | IEP | Neighborhood |
MF | GO:0004386 | helicase activity | IEP | Neighborhood |
MF | GO:0005524 | ATP binding | IEP | Neighborhood |
CC | GO:0005575 | cellular_component | IEP | Neighborhood |
CC | GO:0005634 | nucleus | IEP | Neighborhood |
CC | GO:0005680 | anaphase-promoting complex | IEP | Neighborhood |
BP | GO:0006260 | DNA replication | IEP | Neighborhood |
MF | GO:0008026 | ATP-dependent helicase activity | IEP | Neighborhood |
MF | GO:0008094 | DNA-dependent ATPase activity | IEP | Neighborhood |
MF | GO:0008144 | drug binding | IEP | Neighborhood |
MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
CC | GO:0031461 | cullin-RING ubiquitin ligase complex | IEP | Neighborhood |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
MF | GO:0034061 | DNA polymerase activity | IEP | Neighborhood |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
MF | GO:0042623 | ATPase activity, coupled | IEP | Neighborhood |
MF | GO:0043138 | 3'-5' DNA helicase activity | IEP | Neighborhood |
MF | GO:0043140 | ATP-dependent 3'-5' DNA helicase activity | IEP | Neighborhood |
MF | GO:0043167 | ion binding | IEP | Neighborhood |
CC | GO:0043226 | organelle | IEP | Neighborhood |
CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0044424 | intracellular part | IEP | Neighborhood |
CC | GO:0044428 | nuclear part | IEP | Neighborhood |
CC | GO:0044464 | cell part | IEP | Neighborhood |
BP | GO:0051726 | regulation of cell cycle | IEP | Neighborhood |
MF | GO:0070035 | purine NTP-dependent helicase activity | IEP | Neighborhood |
CC | GO:1990234 | transferase complex | IEP | Neighborhood |
No external refs found! |