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  5. GSVIVT01031566001

GSVIVT01031566001


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS8 component


Gene families : OG0001661 (Archaeplastida) Phylogenetic Tree(s): OG0001661_tree ,
OG_05_0001408 (LandPlants) Phylogenetic Tree(s): OG_05_0001408_tree ,
OG_06_0002231 (SeedPlants) Phylogenetic Tree(s): OG_06_0002231_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01031566001
Cluster HCCA: Cluster_236

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00155570 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 Archaeplastida
AMTR_s00109p00031400 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.21 Archaeplastida
AT5G20290 No alias Ribosomal protein S8e family protein 0.23 Archaeplastida
AT5G59240 No alias Ribosomal protein S8e family protein 0.05 Archaeplastida
Cpa|evm.model.tig00020610.79 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 Archaeplastida
Cre06.g272800 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 Archaeplastida
Gb_28325 No alias component RPS8 of SSU proteome 0.15 Archaeplastida
LOC_Os02g28810.1 No alias 40S ribosomal protein S8 OS=Oryza sativa subsp. japonica... 0.16 Archaeplastida
LOC_Os04g28180.1 No alias component RPS8 of SSU proteome 0.16 Archaeplastida
MA_10436736g0010 No alias 40S ribosomal protein S8 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
MA_14571g0010 No alias component RPS8 of SSU proteome 0.13 Archaeplastida
MA_4907g0010 No alias 40S ribosomal protein S8 OS=Prunus armeniaca... 0.04 Archaeplastida
MA_9738483g0010 No alias component RPS8 of SSU proteome 0.08 Archaeplastida
Mp2g16300.1 No alias component RPS8 of SSU proteome 0.2 Archaeplastida
Pp3c12_18260V3.1 No alias Ribosomal protein S8e family protein 0.05 Archaeplastida
Pp3c13_20020V3.1 No alias Ribosomal protein S8e family protein 0.2 Archaeplastida
Pp3c19_6490V3.1 No alias Ribosomal protein S8e family protein 0.17 Archaeplastida
Pp3c22_1860V3.1 No alias Ribosomal protein S8e family protein 0.12 Archaeplastida
Pp3c4_11370V3.1 No alias Ribosomal protein S8e family protein 0.16 Archaeplastida
Solyc06g007570.3.1 No alias component RPS8 of SSU proteome 0.27 Archaeplastida
Solyc06g083180.4.1 No alias component RPS8 of SSU proteome 0.27 Archaeplastida
Solyc07g065170.3.1 No alias component RPS8 of SSU proteome 0.08 Archaeplastida
Solyc09g057650.3.1 No alias component RPS8 of SSU proteome 0.14 Archaeplastida
Solyc10g006070.3.1 No alias component RPS8 of SSU proteome 0.16 Archaeplastida
Zm00001e004092_P002 No alias component RPS8 of SSU proteome 0.13 Archaeplastida
Zm00001e024995_P001 No alias component RPS8 of SSU proteome 0.18 Archaeplastida
Zm00001e024996_P001 No alias component RPS8 of SSU proteome 0.03 Archaeplastida
Zm00001e025000_P003 No alias no hits & (original description: none) 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006177 GMP biosynthetic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
BP GO:0009163 nucleoside biosynthetic process IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
BP GO:0042451 purine nucleoside biosynthetic process IEP Neighborhood
BP GO:0042455 ribonucleoside biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046037 GMP metabolic process IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
BP GO:0046129 purine ribonucleoside biosynthetic process IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
BP GO:1901070 guanosine-containing compound biosynthetic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
BP GO:1901659 glycosyl compound biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR022309 Ribosomal_S8e/biogenesis_NSA2 2 190
No external refs found!