GSVIVT01031710001


Description : Protein degradation.ER-associated protein degradation (ERAD) machinery.Doa10 ubiquitin ligase component


Gene families : OG0004449 (Archaeplastida) Phylogenetic Tree(s): OG0004449_tree ,
OG_05_0004635 (LandPlants) Phylogenetic Tree(s): OG_05_0004635_tree ,
OG_06_0005839 (SeedPlants) Phylogenetic Tree(s): OG_06_0005839_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01031710001
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00035p00240580 evm_27.TU.AmTr_v1... Protein degradation.ER-associated protein degradation... 0.03 Archaeplastida
AT4G34100 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Gb_37944 No alias ubiquitin ligase component Doa10 of ER-associated... 0.07 Archaeplastida
LOC_Os06g43210.1 No alias ubiquitin ligase component Doa10 of ER-associated... 0.07 Archaeplastida
MA_130450g0010 No alias ubiquitin ligase component Doa10 of ER-associated... 0.03 Archaeplastida
MA_15237g0010 No alias ubiquitin ligase component Doa10 of ER-associated... 0.03 Archaeplastida
Mp2g15190.1 No alias ubiquitin ligase component Doa10 of ER-associated... 0.04 Archaeplastida
Pp3c9_10370V3.1 No alias RING/U-box superfamily protein 0.04 Archaeplastida
Pp3c9_10380V3.1 No alias RING/U-box superfamily protein 0.05 Archaeplastida
Zm00001e030477_P001 No alias ubiquitin ligase component Doa10 of ER-associated... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Neighborhood
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
CC GO:0070461 SAGA-type complex IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 60 106
No external refs found!