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  5. GSVIVT01031785001

GSVIVT01031785001


Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.OTP51 splicing factor


Gene families : OG0007260 (Archaeplastida) Phylogenetic Tree(s): OG0007260_tree ,
OG_05_0006849 (LandPlants) Phylogenetic Tree(s): OG_05_0006849_tree ,
OG_06_0008359 (SeedPlants) Phylogenetic Tree(s): OG_06_0008359_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01031785001
Cluster HCCA: Cluster_196

Target Alias Description ECC score Gene Family Method Actions
AT2G15820 OTP51 endonucleases 0.03 Archaeplastida
LOC_Os02g47360.1 No alias OTP51 plastidial RNA splicing factor 0.05 Archaeplastida
Smo438810 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
Solyc11g066850.3.1 No alias OTP51 plastidial RNA splicing factor 0.04 Archaeplastida
Zm00001e015566_P003 No alias OTP51 plastidial RNA splicing factor 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0032977 membrane insertase activity IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR004860 LAGLIDADG_2 580 745
IPR002885 Pentatricopeptide_repeat 345 369
IPR002885 Pentatricopeptide_repeat 383 403
IPR002885 Pentatricopeptide_repeat 481 509
IPR002885 Pentatricopeptide_repeat 517 544
No external refs found!