Description : Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana
Gene families : OG0008008 (Archaeplastida) Phylogenetic Tree(s): OG0008008_tree ,
OG_05_0004984 (LandPlants) Phylogenetic Tree(s): OG_05_0004984_tree ,
OG_06_0001824 (SeedPlants) Phylogenetic Tree(s): OG_06_0001824_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: GSVIVT01031787001 | |
Cluster | HCCA: Cluster_63 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00140p00073890 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At5g39710... | 0.04 | Archaeplastida | |
Zm00001e026951_P002 | No alias | Pentatricopeptide repeat-containing protein At5g39710... | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003830 | beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity | IEP | Neighborhood |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006284 | base-excision repair | IEP | Neighborhood |
BP | GO:0006396 | RNA processing | IEP | Neighborhood |
BP | GO:0006487 | protein N-linked glycosylation | IEP | Neighborhood |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
MF | GO:0008375 | acetylglucosaminyltransferase activity | IEP | Neighborhood |
BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
BP | GO:0051259 | protein complex oligomerization | IEP | Neighborhood |
BP | GO:0051260 | protein homooligomerization | IEP | Neighborhood |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
MF | GO:0140103 | catalytic activity, acting on a glycoprotein | IEP | Neighborhood |
MF | GO:0140110 | transcription regulator activity | IEP | Neighborhood |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 415 | 440 |
IPR002885 | Pentatricopeptide_repeat | 6 | 37 |
IPR002885 | Pentatricopeptide_repeat | 253 | 301 |
IPR002885 | Pentatricopeptide_repeat | 43 | 92 |
IPR002885 | Pentatricopeptide_repeat | 113 | 162 |
IPR002885 | Pentatricopeptide_repeat | 326 | 371 |
IPR002885 | Pentatricopeptide_repeat | 187 | 231 |
IPR002885 | Pentatricopeptide_repeat | 444 | 492 |
No external refs found! |