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  5. GSVIVT01031928001

GSVIVT01031928001


Description : Putative pentatricopeptide repeat-containing protein At3g18840 OS=Arabidopsis thaliana


Gene families : OG0015489 (Archaeplastida) Phylogenetic Tree(s): OG0015489_tree ,
OG_05_0012829 (LandPlants) Phylogenetic Tree(s): OG_05_0012829_tree ,
OG_06_0011984 (SeedPlants) Phylogenetic Tree(s): OG_06_0011984_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01031928001
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
Solyc01g095600.4.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0006383 transcription by RNA polymerase III IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 55 79
IPR002885 Pentatricopeptide_repeat 86 115
IPR002885 Pentatricopeptide_repeat 327 352
IPR002885 Pentatricopeptide_repeat 356 381
IPR002885 Pentatricopeptide_repeat 161 182
IPR002885 Pentatricopeptide_repeat 192 213
IPR002885 Pentatricopeptide_repeat 429 451
IPR002885 Pentatricopeptide_repeat 25 54
IPR002885 Pentatricopeptide_repeat 221 268
IPR002885 Pentatricopeptide_repeat 455 501
No external refs found!