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  5. GSVIVT01032076001

GSVIVT01032076001


Description : RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor


Gene families : OG0000935 (Archaeplastida) Phylogenetic Tree(s): OG0000935_tree ,
OG_05_0000679 (LandPlants) Phylogenetic Tree(s): OG_05_0000679_tree ,
OG_06_0000528 (SeedPlants) Phylogenetic Tree(s): OG_06_0000528_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01032076001
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00093p00164790 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.06 Archaeplastida
AMTR_s00114p00100630 evm_27.TU.AmTr_v1... Zinc finger protein WIP3 OS=Arabidopsis thaliana 0.06 Archaeplastida
AT1G13290 WIP6, DOT5 C2H2-like zinc finger protein 0.09 Archaeplastida
LOC_Os09g13680.1 No alias C2H2 zinc finger transcription factor 0.06 Archaeplastida
MA_3555g0010 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
MA_97533g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp1g09500.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Solyc06g074360.4.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e003504_P001 No alias C2H2 zinc finger transcription factor 0.08 Archaeplastida
Zm00001e009663_P001 No alias C2H2 zinc finger transcription factor 0.19 Archaeplastida
Zm00001e019211_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e024373_P001 No alias C2H2 zinc finger transcription factor 0.1 Archaeplastida
Zm00001e026959_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e037606_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
MF GO:0016830 carbon-carbon lyase activity IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!