GSVIVT01032116001

Description : Polygalacturonase OS=Persea americana

Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0000273 (LandPlants) Phylogenetic Tree(s): OG_05_0000273_tree ,
OG_06_0000208 (SeedPlants) Phylogenetic Tree(s): OG_06_0000208_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01032116001
Cluster	HCCA: Cluster_81

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00197210	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.02	Archaeplastida
AT1G05660	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT1G60590	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT2G43880	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT2G43890	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT4G01890	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT5G14650	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
LOC_Os01g19170.1	No alias	Polygalacturonase At1g48100 OS=Arabidopsis thaliana...	0.04	Archaeplastida
LOC_Os03g11760.1	No alias	Polygalacturonase OS=Actinidia deliciosa...	0.02	Archaeplastida
MA_8561980g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
Smo111266	No alias	Polygalacturonase OS=Chamaecyparis obtusa	0.04	Archaeplastida
Solyc01g079130.2.1	No alias	Polygalacturonase At1g48100 OS=Arabidopsis thaliana...	0.04	Archaeplastida
Zm00001e006092_P001	No alias	polygalacturonase (QRT2)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0008037	cell recognition	IEP	Neighborhood
BP	GO:0022414	reproductive process	IEP	Neighborhood
BP	GO:0048544	recognition of pollen	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	165	225

External Links

No external refs found!