1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01032442001

GSVIVT01032442001


Description : RNA biosynthesis.transcriptional activation.MYB superfamily.MYB transcription factor


Gene families : OG0000695 (Archaeplastida) Phylogenetic Tree(s): OG0000695_tree ,
OG_05_0001582 (LandPlants) Phylogenetic Tree(s): OG_05_0001582_tree ,
OG_06_0000157 (SeedPlants) Phylogenetic Tree(s): OG_06_0000157_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01032442001
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
AT3G06480 No alias DEAD box RNA helicase family protein 0.04 Archaeplastida
LOC_Os01g36860.1 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa... 0.03 Archaeplastida
MA_19015g0010 No alias pre-mRNA splicing regulator (DDX5) 0.05 Archaeplastida
MA_5118g0010 No alias ATP-dependent RNA helicase-like protein DB10... 0.04 Archaeplastida
MA_881548g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Pp3c7_8530V3.1 No alias DEAD box RNA helicase 1 0.03 Archaeplastida
Smo98552 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Zm00001e011376_P001 No alias ATP-dependent RNA helicase-like protein DB10... 0.03 Archaeplastida
Zm00001e016546_P001 No alias pre-mRNA splicing regulator (DDX5) 0.05 Archaeplastida
Zm00001e016763_P001 No alias DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa... 0.03 Archaeplastida
Zm00001e020727_P006 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa... 0.04 Archaeplastida
Zm00001e027719_P003 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Neighborhood
BP GO:0000272 polysaccharide catabolic process IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016161 beta-amylase activity IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0070461 SAGA-type complex IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 46 216
IPR001650 Helicase_C 253 361
No external refs found!