GSVIVT01032454001

Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL12 component

Gene families : OG0005000 (Archaeplastida) Phylogenetic Tree(s): OG0005000_tree ,
OG_05_0004365 (LandPlants) Phylogenetic Tree(s): OG_05_0004365_tree ,
OG_06_0005437 (SeedPlants) Phylogenetic Tree(s): OG_06_0005437_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01032454001
Cluster	HCCA: Cluster_42

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00036p00109340	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.06	Archaeplastida
AT3G27830	RPL12-A, RPL12	ribosomal protein L12-A	0.18	Archaeplastida
AT3G27850	RPL12-C	ribosomal protein L12-C	0.14	Archaeplastida
Cre13.g581650	No alias	Protein biosynthesis.organelle translation...	0.06	Archaeplastida
Gb_05150	No alias	component psRPL12 of large ribosomal subunit proteome	0.05	Archaeplastida
LOC_Os01g47330.1	No alias	component psRPL12 of large ribosomal subunit proteome	0.09	Archaeplastida
LOC_Os05g49320.1	No alias	component psRPL12 of large ribosomal subunit proteome	0.1	Archaeplastida
Mp5g15720.1	No alias	component psRPL12 of large ribosomal subunit proteome	0.09	Archaeplastida
Pp3c16_2080V3.1	No alias	ribosomal protein L12-C	0.11	Archaeplastida
Pp3c25_1440V3.1	No alias	ribosomal protein L12-C	0.07	Archaeplastida
Pp3c4_24130V3.1	No alias	ribosomal protein L12-C	0.07	Archaeplastida
Pp3c5_2700V3.1	No alias	ribosomal protein L12-C	0.03	Archaeplastida
Solyc02g086730.3.1	No alias	component psRPL12 of large ribosomal subunit proteome	0.09	Archaeplastida
Zm00001e020247_P001	No alias	component psRPL12 of large ribosomal subunit proteome	0.06	Archaeplastida
Zm00001e028001_P001	No alias	component psRPL12 of large ribosomal subunit proteome	0.09	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Neighborhood
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005622	intracellular	IEP	Neighborhood
CC	GO:0005840	ribosome	IEP	Neighborhood
BP	GO:0006457	protein folding	IEP	Neighborhood
MF	GO:0008565	protein transporter activity	IEP	Neighborhood
CC	GO:0009521	photosystem	IEP	Neighborhood
CC	GO:0009522	photosystem I	IEP	Neighborhood
CC	GO:0009538	photosystem I reaction center	IEP	Neighborhood
BP	GO:0015979	photosynthesis	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
MF	GO:0016859	cis-trans isomerase activity	IEP	Neighborhood
BP	GO:0018208	peptidyl-proline modification	IEP	Neighborhood
BP	GO:0019725	cellular homeostasis	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0042592	homeostatic process	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043228	non-membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044436	thylakoid part	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0045454	cell redox homeostasis	IEP	Neighborhood
BP	GO:0065008	regulation of biological quality	IEP	Neighborhood
CC	GO:0098796	membrane protein complex	IEP	Neighborhood
CC	GO:1990904	ribonucleoprotein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR013823	Ribosomal_L7/L12_C	77	143

External Links

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GSVIVT01032454001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation