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  5. GSVIVT01032591001

GSVIVT01032591001


Description : Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0008311 (Archaeplastida) Phylogenetic Tree(s): OG0008311_tree ,
OG_05_0007188 (LandPlants) Phylogenetic Tree(s): OG_05_0007188_tree ,
OG_06_0007441 (SeedPlants) Phylogenetic Tree(s): OG_06_0007441_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01032591001
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g61630.1 No alias Pentatricopeptide repeat-containing protein At5g39980,... 0.03 Archaeplastida
Smo73828 No alias Pentatricopeptide repeat-containing protein At5g39980,... 0.04 Archaeplastida
Solyc02g087560.1.1 No alias Pentatricopeptide repeat-containing protein At5g39980,... 0.07 Archaeplastida
Zm00001e019387_P001 No alias Pentatricopeptide repeat-containing protein At5g39980,... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 649 672
IPR002885 Pentatricopeptide_repeat 366 396
IPR002885 Pentatricopeptide_repeat 538 566
IPR002885 Pentatricopeptide_repeat 471 498
IPR002885 Pentatricopeptide_repeat 577 602
IPR002885 Pentatricopeptide_repeat 213 272
IPR002885 Pentatricopeptide_repeat 399 442
IPR002885 Pentatricopeptide_repeat 153 200
IPR002885 Pentatricopeptide_repeat 293 339
No external refs found!