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  5. GSVIVT01032592001

GSVIVT01032592001


Description : RNA biosynthesis.transcriptional activation.AS2/LOB transcription factor


Gene families : OG0000101 (Archaeplastida) Phylogenetic Tree(s): OG0000101_tree ,
OG_05_0000037 (LandPlants) Phylogenetic Tree(s): OG_05_0000037_tree ,
OG_06_0000043 (SeedPlants) Phylogenetic Tree(s): OG_06_0000043_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01032592001
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00241970 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 Archaeplastida
AMTR_s00021p00187850 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
AMTR_s00076p00127530 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
AMTR_s00080p00153120 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 Archaeplastida
AMTR_s00184p00044240 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
AT1G06280 LBD2 LOB domain-containing protein 2 0.05 Archaeplastida
AT1G07900 LBD1 LOB domain-containing protein 1 0.04 Archaeplastida
AT1G65620 AS2 Lateral organ boundaries (LOB) domain family protein 0.06 Archaeplastida
AT2G28500 LBD11 LOB domain-containing protein 11 0.03 Archaeplastida
AT2G30340 LBD13 LOB domain-containing protein 13 0.03 Archaeplastida
AT2G40470 LBD15, ASL11 LOB domain-containing protein 15 0.06 Archaeplastida
AT3G47870 LBD27, SCP LOB domain-containing protein 27 0.03 Archaeplastida
AT3G50510 LBD28 LOB domain-containing protein 28 0.04 Archaeplastida
GSVIVT01004323001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
GSVIVT01010625001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.05 Archaeplastida
GSVIVT01024662001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
GSVIVT01025126001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
GSVIVT01032714001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
Gb_10524 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Gb_16914 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Gb_20676 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Gb_21467 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Gb_22180 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Gb_29853 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Gb_40767 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida
MA_292200g0010 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Mp7g17250.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Mp8g09250.1 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Pp3c20_10200V3.1 No alias Lateral organ boundaries (LOB) domain family protein 0.02 Archaeplastida
Pp3c23_14630V3.1 No alias LOB domain-containing protein 13 0.02 Archaeplastida
Solyc02g087570.1.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Solyc03g095940.1.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Solyc03g113360.4.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Solyc05g048740.3.1 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Solyc06g050430.3.1 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Solyc06g082310.3.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Solyc06g082430.2.1 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0010333 terpene synthase activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Neighborhood
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0033897 ribonuclease T2 activity IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004883 LOB 10 106
No external refs found!