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  5. GSVIVT01032606001

GSVIVT01032606001


Description : Probable RNA 3-terminal phosphate cyclase-like protein OS=Arabidopsis thaliana


Gene families : OG0004032 (Archaeplastida) Phylogenetic Tree(s): OG0004032_tree ,
OG_05_0007268 (LandPlants) Phylogenetic Tree(s): OG_05_0007268_tree ,
OG_06_0007707 (SeedPlants) Phylogenetic Tree(s): OG_06_0007707_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01032606001
Cluster HCCA: Cluster_197

Target Alias Description ECC score Gene Family Method Actions
AT5G22100 No alias RNA cyclase family protein 0.06 Archaeplastida
Cre09.g400367 No alias Probable RNA 3-terminal phosphate cyclase-like protein... 0.07 Archaeplastida
LOC_Os03g61790.1 No alias Probable RNA 3-terminal phosphate cyclase-like protein... 0.04 Archaeplastida
Pp3c15_22440V3.1 No alias RNA cyclase family protein 0.04 Archaeplastida
Solyc02g069340.4.1 No alias Probable RNA 3-terminal phosphate cyclase-like protein... 0.03 Archaeplastida
Zm00001e034467_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0004177 aminopeptidase activity IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008649 rRNA methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
BP GO:0031167 rRNA methylation IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0036265 RNA (guanine-N7)-methylation IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0070475 rRNA base methylation IEP Neighborhood
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
InterPro domains Description Start Stop
IPR023797 RNA3'_phos_cyclase_dom 8 350
IPR013791 RNA3'-term_phos_cycl_insert 185 297
No external refs found!