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  5. GSVIVT01032714001

GSVIVT01032714001


Description : RNA biosynthesis.transcriptional activation.AS2/LOB transcription factor


Gene families : OG0000101 (Archaeplastida) Phylogenetic Tree(s): OG0000101_tree ,
OG_05_0000037 (LandPlants) Phylogenetic Tree(s): OG_05_0000037_tree ,
OG_06_0002612 (SeedPlants) Phylogenetic Tree(s): OG_06_0002612_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01032714001
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00187850 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 Archaeplastida
AMTR_s00032p00142260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
AMTR_s00076p00127530 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 Archaeplastida
AMTR_s00080p00153120 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.06 Archaeplastida
AT1G06280 LBD2 LOB domain-containing protein 2 0.03 Archaeplastida
AT1G07900 LBD1 LOB domain-containing protein 1 0.04 Archaeplastida
AT1G31320 LBD4 LOB domain-containing protein 4 0.04 Archaeplastida
AT1G65620 AS2 Lateral organ boundaries (LOB) domain family protein 0.03 Archaeplastida
AT2G28500 LBD11 LOB domain-containing protein 11 0.07 Archaeplastida
AT2G30340 LBD13 LOB domain-containing protein 13 0.03 Archaeplastida
AT2G40470 LBD15, ASL11 LOB domain-containing protein 15 0.03 Archaeplastida
GSVIVT01003546001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.05 Archaeplastida
GSVIVT01004323001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.05 Archaeplastida
GSVIVT01006269001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.05 Archaeplastida
GSVIVT01016332001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
GSVIVT01016335001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
GSVIVT01020353001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
GSVIVT01032415001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
GSVIVT01032592001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
Gb_08465 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Gb_10524 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Gb_13424 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Gb_16914 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Gb_20398 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Gb_20676 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Gb_21467 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida
Gb_29853 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Gb_38978 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Gb_40684 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Gb_40767 No alias transcription factor (AS2/LOB) 0.09 Archaeplastida
LOC_Os01g14030.1 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
LOC_Os03g17810.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
LOC_Os05g07270.1 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
LOC_Os05g27980.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
LOC_Os09g19950.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
MA_10430986g0010 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
MA_10434193g0010 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
MA_10434782g0020 No alias transcription factor (AS2/LOB) 0.06 Archaeplastida
MA_127139g0010 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
MA_292200g0010 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
MA_66501g0010 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
MA_88711g0010 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida
MA_9412105g0010 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Mp1g14500.1 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Mp7g00650.1 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Mp7g17250.1 No alias transcription factor (AS2/LOB) 0.06 Archaeplastida
Pp3c20_10200V3.1 No alias Lateral organ boundaries (LOB) domain family protein 0.03 Archaeplastida
Pp3c22_5950V3.1 No alias Lateral organ boundaries (LOB) domain family protein 0.03 Archaeplastida
Pp3c23_14630V3.1 No alias LOB domain-containing protein 13 0.06 Archaeplastida
Solyc02g069440.3.1 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Solyc03g095940.1.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Solyc03g113360.4.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Solyc05g048740.3.1 No alias transcription factor (AS2/LOB) 0.01 Archaeplastida
Solyc06g050430.3.1 No alias transcription factor (AS2/LOB) 0.01 Archaeplastida
Solyc06g050950.3.1 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida
Solyc06g082310.3.1 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Solyc06g082430.2.1 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Solyc11g072470.3.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Solyc12g010810.1.1 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Zm00001e005116_P001 No alias transcription factor (AS2/LOB) 0.01 Archaeplastida
Zm00001e016785_P005 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Zm00001e019004_P002 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Zm00001e026736_P001 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida
Zm00001e029898_P001 No alias transcription factor (AS2/LOB) 0.01 Archaeplastida
Zm00001e030195_P001 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Zm00001e031510_P001 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008172 S-methyltransferase activity IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
CC GO:0031012 extracellular matrix IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
CC GO:0044421 extracellular region part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004883 LOB 42 139
No external refs found!