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  5. AMTR_s00045p00045490

AMTR_s00045p00045490 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00045.24

Description : Cell wall.lignin.monolignol conjugation and polymerization.lignin laccase


Gene families : OG0000114 (Archaeplastida) Phylogenetic Tree(s): OG0000114_tree ,
OG_05_0000045 (LandPlants) Phylogenetic Tree(s): OG_05_0000045_tree ,
OG_06_0000178 (SeedPlants) Phylogenetic Tree(s): OG_06_0000178_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00045p00045490
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00061860 evm_27.TU.AmTr_v1... Cell wall.lignin.monolignol conjugation and... 0.03 Archaeplastida
AMTR_s00069p00085210 evm_27.TU.AmTr_v1... Enzyme classification.EC_1 oxidoreductases.EC_1.10... 0.05 Archaeplastida
AT2G29130 ATLAC2, LAC2 laccase 2 0.15 Archaeplastida
AT2G30210 LAC3 laccase 3 0.05 Archaeplastida
AT2G38080 LAC4, IRX12,... Laccase/Diphenol oxidase family protein 0.16 Archaeplastida
AT3G09220 LAC7 laccase 7 0.05 Archaeplastida
AT5G01190 LAC10 laccase 10 0.15 Archaeplastida
AT5G03260 LAC11 laccase 11 0.06 Archaeplastida
AT5G05390 LAC12 laccase 12 0.15 Archaeplastida
AT5G48100 TT10, LAC15, ATLAC15 Laccase/Diphenol oxidase family protein 0.03 Archaeplastida
AT5G58910 LAC16 laccase 16 0.02 Archaeplastida
AT5G60020 ATLAC17, LAC17 laccase 17 0.14 Archaeplastida
GSVIVT01001603001 No alias Laccase-14 OS=Arabidopsis thaliana 0.07 Archaeplastida
GSVIVT01001604001 No alias Laccase-14 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01012343001 No alias Laccase-14 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01016372001 No alias Cell wall.lignin.monolignol conjugation and... 0.08 Archaeplastida
GSVIVT01016490001 No alias Cell wall.lignin.monolignol conjugation and... 0.12 Archaeplastida
GSVIVT01016513001 No alias Cell wall.lignin.monolignol conjugation and... 0.12 Archaeplastida
GSVIVT01018939001 No alias Laccase-11 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01024795001 No alias Cell wall.lignin.monolignol conjugation and... 0.12 Archaeplastida
GSVIVT01025046001 No alias Cell wall.lignin.monolignol conjugation and... 0.14 Archaeplastida
GSVIVT01025077001 No alias Cell wall.lignin.monolignol conjugation and... 0.03 Archaeplastida
GSVIVT01025694001 No alias Laccase-11 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01032744001 No alias Laccase-12 OS=Arabidopsis thaliana 0.14 Archaeplastida
GSVIVT01033501001 No alias Laccase-11 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01034003001 No alias Cell wall.lignin.monolignol conjugation and... 0.13 Archaeplastida
GSVIVT01034040001 No alias Laccase-7 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01034137001 No alias Cell wall.lignin.monolignol conjugation and... 0.12 Archaeplastida
GSVIVT01034138001 No alias Cell wall.lignin.monolignol conjugation and... 0.15 Archaeplastida
GSVIVT01034139001 No alias Cell wall.lignin.monolignol conjugation and... 0.09 Archaeplastida
GSVIVT01034146001 No alias Cell wall.lignin.monolignol conjugation and... 0.13 Archaeplastida
GSVIVT01034783001 No alias Laccase-15 OS=Arabidopsis thaliana 0.04 Archaeplastida
Gb_00462 No alias lignin laccase 0.05 Archaeplastida
Gb_11065 No alias Laccase-11 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Gb_14613 No alias lignin laccase 0.03 Archaeplastida
Gb_14614 No alias Laccase-4 OS=Oryza sativa subsp. japonica... 0.08 Archaeplastida
Gb_23947 No alias Laccase-1 OS=Arabidopsis thaliana (sp|q9lms3|lac1_arath... 0.03 Archaeplastida
Gb_33400 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Gb_34469 No alias Laccase-12 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os01g61160.1 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
LOC_Os01g62480.1 No alias lignin laccase 0.1 Archaeplastida
LOC_Os01g62490.1 No alias lignin laccase 0.05 Archaeplastida
LOC_Os01g62600.1 No alias Putative laccase-5 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
LOC_Os03g16610.1 No alias lignin laccase 0.08 Archaeplastida
LOC_Os03g18640.1 No alias Laccase-5 OS=Arabidopsis thaliana (sp|q9siy8|lac5_arath... 0.1 Archaeplastida
LOC_Os05g38390.1 No alias Putative laccase-11 OS=Oryza sativa subsp. japonica... 0.07 Archaeplastida
LOC_Os05g38420.1 No alias lignin laccase 0.07 Archaeplastida
LOC_Os11g01730.1 No alias Putative laccase-17 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
LOC_Os11g47390.1 No alias Laccase-21 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os12g01730.1 No alias Laccase-23 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
LOC_Os12g15680.1 No alias Laccase-24 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
LOC_Os12g15920.1 No alias Laccase-25 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
MA_10191230g0010 No alias No annotation 0.02 Archaeplastida
MA_10427033g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10428927g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10430789g0010 No alias Putative laccase-5 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_10432715g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_10432961g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10434084g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_10434090g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_10436564g0010 No alias Putative laccase-17 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_115430g0010 No alias Laccase-17 OS=Arabidopsis thaliana... 0.06 Archaeplastida
MA_118833g0010 No alias lignin laccase 0.05 Archaeplastida
MA_122769g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_14240g0010 No alias Laccase-4 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
MA_170004g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_185257g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_192464g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_19643g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_205016g0010 No alias Laccase-4 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
MA_21316g0010 No alias Laccase-5 OS=Arabidopsis thaliana (sp|q9siy8|lac5_arath... 0.02 Archaeplastida
MA_213397g0020 No alias Laccase-12 OS=Arabidopsis thaliana... 0.07 Archaeplastida
MA_28768g0010 No alias Laccase-4 OS=Arabidopsis thaliana (sp|o80434|lac4_arath... 0.02 Archaeplastida
MA_33057g0010 No alias lignin laccase 0.04 Archaeplastida
MA_488981g0010 No alias Laccase-13 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_57140g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_63042g0010 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
MA_66348g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_7035458g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_75861g0010 No alias Laccase-1 OS=Arabidopsis thaliana (sp|q9lms3|lac1_arath... 0.02 Archaeplastida
MA_76578g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_812936g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_8866650g0010 No alias Laccase-12 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_897132g0010 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_9916300g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp3g20310.1 No alias Laccase-2 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Pp3c18_3460V3.1 No alias laccase 12 0.03 Archaeplastida
Smo105894 No alias Laccase-4 OS=Oryza sativa subsp. japonica 0.02 Archaeplastida
Smo404333 No alias Laccase-4 OS=Oryza sativa subsp. japonica 0.05 Archaeplastida
Smo438115 No alias Laccase-4 OS=Oryza sativa subsp. japonica 0.04 Archaeplastida
Smo95740 No alias Laccase-13 OS=Oryza sativa subsp. japonica 0.04 Archaeplastida
Solyc02g062650.3.1 No alias Laccase-11 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc02g085120.3.1 No alias Laccase-11 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc05g043360.3.1 No alias Laccase-7 OS=Arabidopsis thaliana (sp|q9sr40|lac7_arath... 0.04 Archaeplastida
Solyc05g050540.4.1 No alias Laccase-6 OS=Arabidopsis thaliana (sp|q9zpy2|lac6_arath... 0.07 Archaeplastida
Solyc05g052340.4.1 No alias Laccase-5 OS=Arabidopsis thaliana (sp|q9siy8|lac5_arath... 0.18 Archaeplastida
Solyc05g052370.3.1 No alias Laccase-12 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Solyc05g052390.3.1 No alias Laccase-12 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc05g052400.3.1 No alias Laccase-12 OS=Arabidopsis thaliana... 0.17 Archaeplastida
Solyc06g048860.3.1 No alias Laccase-5 OS=Arabidopsis thaliana (sp|q9siy8|lac5_arath... 0.09 Archaeplastida
Solyc06g050530.3.1 No alias Laccase-12 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc06g076330.3.1 No alias lignin laccase 0.09 Archaeplastida
Solyc06g076760.2.1 No alias lignin laccase 0.04 Archaeplastida
Solyc06g082240.2.1 No alias Laccase-3 OS=Arabidopsis thaliana (sp|q56yt0|lac3_arath... 0.05 Archaeplastida
Solyc07g049460.3.1 No alias Laccase-7 OS=Arabidopsis thaliana (sp|q9sr40|lac7_arath... 0.09 Archaeplastida
Solyc09g010990.3.1 No alias lignin laccase 0.19 Archaeplastida
Solyc09g011960.2.1 No alias lignin laccase 0.04 Archaeplastida
Solyc09g011970.3.1 No alias no hits & (original description: none) 0.16 Archaeplastida
Solyc09g014240.4.1 No alias lignin laccase 0.18 Archaeplastida
Solyc09g150105.1.1 No alias lignin laccase 0.03 Archaeplastida
Solyc10g076830.2.1 No alias lignin laccase 0.15 Archaeplastida
Solyc10g085090.3.1 No alias No annotation 0.19 Archaeplastida
Solyc12g056820.2.1 No alias Laccase-15 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e001209_P001 No alias lignin laccase 0.11 Archaeplastida
Zm00001e001354_P001 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
Zm00001e015854_P001 No alias Putative laccase-9 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Zm00001e019303_P001 No alias lignin laccase 0.14 Archaeplastida
Zm00001e019315_P001 No alias lignin laccase 0.04 Archaeplastida
Zm00001e019316_P001 No alias lignin laccase 0.14 Archaeplastida
Zm00001e019412_P001 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.07 Archaeplastida
Zm00001e021354_P001 No alias Laccase-25 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Zm00001e023953_P001 No alias Laccase-23 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Zm00001e028767_P001 No alias no hits & (original description: none) 0.09 Archaeplastida
Zm00001e028830_P002 No alias Laccase-3 OS=Oryza sativa subsp. japonica... 0.08 Archaeplastida
Zm00001e031826_P001 No alias lignin laccase 0.14 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEA Interproscan
MF GO:0016491 oxidoreductase activity IEA Interproscan
BP GO:0055114 oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
MF GO:0003840 obsolete gamma-glutamyltransferase activity IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006749 glutathione metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016759 cellulose synthase activity IEP Neighborhood
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
BP GO:0030243 cellulose metabolic process IEP Neighborhood
BP GO:0030244 cellulose biosynthetic process IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR011706 Cu-oxidase_2 413 548
IPR011707 Cu-oxidase_3 33 144
IPR001117 Cu-oxidase 157 307
No external refs found!