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  5. GSVIVT01032756001

GSVIVT01032756001


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS4 component


Gene families : OG0002504 (Archaeplastida) Phylogenetic Tree(s): OG0002504_tree ,
OG_05_0002300 (LandPlants) Phylogenetic Tree(s): OG_05_0002300_tree ,
OG_06_0002958 (SeedPlants) Phylogenetic Tree(s): OG_06_0002958_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01032756001
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00058440 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 Archaeplastida
AT2G17360 No alias Ribosomal protein S4 (RPS4A) family protein 0.14 Archaeplastida
AT5G07090 No alias Ribosomal protein S4 (RPS4A) family protein 0.13 Archaeplastida
AT5G58420 No alias Ribosomal protein S4 (RPS4A) family protein 0.16 Archaeplastida
Cpa|evm.model.tig00021433.38 No alias 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica 0.07 Archaeplastida
Cre06.g308250 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 Archaeplastida
Gb_18544 No alias component RPS4 of SSU proteome 0.04 Archaeplastida
LOC_Os01g25610.1 No alias component RPS4 of SSU proteome 0.09 Archaeplastida
LOC_Os02g01560.1 No alias component RPS4 of SSU proteome 0.1 Archaeplastida
LOC_Os05g30530.1 No alias component RPS4 of SSU proteome 0.07 Archaeplastida
MA_127596g0010 No alias component RPS4 of SSU proteome 0.06 Archaeplastida
Mp8g03280.1 No alias component RPS4 of SSU proteome 0.08 Archaeplastida
Pp3c11_3690V3.1 No alias Ribosomal protein S4 (RPS4A) family protein 0.14 Archaeplastida
Pp3c1_8290V3.1 No alias Ribosomal protein S4 (RPS4A) family protein 0.11 Archaeplastida
Pp3c25_3730V3.1 No alias Ribosomal protein S4 (RPS4A) family protein 0.06 Archaeplastida
Pp3c25_3736V3.1 No alias Ribosomal protein S4 (RPS4A) family protein 0.03 Archaeplastida
Pp3c6_7730V3.1 No alias Ribosomal protein S4 (RPS4A) family protein 0.06 Archaeplastida
Pp3c7_23800V3.1 No alias Ribosomal protein S4 (RPS4A) family protein 0.09 Archaeplastida
Smo148442 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 Archaeplastida
Solyc02g070330.4.1 No alias component RPS4 of SSU proteome 0.13 Archaeplastida
Solyc02g070340.3.1 No alias component RPS4 of SSU proteome 0.12 Archaeplastida
Zm00001e006307_P001 No alias component RPS4 of SSU proteome 0.12 Archaeplastida
Zm00001e011676_P001 No alias component RPS4 of SSU proteome 0.12 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR013845 Ribosomal_S4e_central_region 77 151
IPR032277 40S_S4_C 194 240
IPR005824 KOW 159 192
IPR013843 Ribosomal_S4e_N 1 21
IPR002942 S4_RNA-bd 29 72
No external refs found!