1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00045p00048330

AMTR_s00045p00048330 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00045.30

Description : Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00045p00048330
Cluster HCCA: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00222920 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
AMTR_s00030p00109240 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AT1G06140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Cre08.g358250 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.02 Archaeplastida
GSVIVT01000420001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01011501001 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.03 Archaeplastida
GSVIVT01021774001 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.03 Archaeplastida
GSVIVT01024870001 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
GSVIVT01027525001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
LOC_Os03g44210.2 No alias RNA editing factor (SEL1/PDM1) 0.03 Archaeplastida
LOC_Os03g63260.3 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
LOC_Os07g10400.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
LOC_Os08g25280.1 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.03 Archaeplastida
Pp3c24_14870V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
Smo173139 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Smo30095 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Smo399 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Archaeplastida
Solyc01g104090.4.1 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 Archaeplastida
Solyc02g071300.1.1 No alias Pentatricopeptide repeat-containing protein At5g46460,... 0.04 Archaeplastida
Solyc02g072020.3.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc02g088650.1.1 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.04 Archaeplastida
Solyc04g063300.3.1 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.03 Archaeplastida
Solyc04g082870.1.1 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.03 Archaeplastida
Solyc06g066080.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Solyc07g053520.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e014825_P001 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
Zm00001e034478_P001 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.04 Archaeplastida
Zm00001e039394_P003 No alias Pentatricopeptide repeat-containing protein At5g04780,... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
CC GO:0005639 integral component of nuclear inner membrane IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008373 sialyltransferase activity IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
MF GO:0030674 protein binding, bridging IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031229 intrinsic component of nuclear inner membrane IEP Neighborhood
CC GO:0031300 intrinsic component of organelle membrane IEP Neighborhood
CC GO:0031301 integral component of organelle membrane IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044453 nuclear membrane part IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
MF GO:0051015 actin filament binding IEP Neighborhood
MF GO:0060090 molecular adaptor activity IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 352 374
IPR002885 Pentatricopeptide_repeat 279 308
IPR002885 Pentatricopeptide_repeat 49 70
IPR002885 Pentatricopeptide_repeat 453 476
IPR002885 Pentatricopeptide_repeat 522 547
IPR002885 Pentatricopeptide_repeat 77 104
IPR002885 Pentatricopeptide_repeat 175 222
IPR002885 Pentatricopeptide_repeat 377 425
No external refs found!