AMTR_s00045p00052450 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00045.34

Description : RNA biosynthesis.transcriptional activation.CAMTA transcription factor


Gene families : OG0000551 (Archaeplastida) Phylogenetic Tree(s): OG0000551_tree ,
OG_05_0000809 (LandPlants) Phylogenetic Tree(s): OG_05_0000809_tree ,
OG_06_0001322 (SeedPlants) Phylogenetic Tree(s): OG_06_0001322_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00045p00052450
Cluster HCCA: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
AT1G67310 No alias Calmodulin-binding transcription activator protein with... 0.04 Archaeplastida
Gb_35918 No alias transcription factor (CAMTA) 0.02 Archaeplastida
MA_10435485g0010 No alias transcription factor (CAMTA) 0.02 Archaeplastida
MA_46443g0010 No alias transcription factor (CAMTA) 0.01 Archaeplastida
MA_959704g0010 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0032787 monocarboxylic acid metabolic process IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000048 IQ_motif_EF-hand-BS 955 974
IPR000048 IQ_motif_EF-hand-BS 980 998
IPR005559 CG-1_dom 16 132
IPR020683 Ankyrin_rpt-contain_dom 732 803
No external refs found!