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  5. GSVIVT01032921001

GSVIVT01032921001


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.PES-BOP1-WDR12 (PeBoW) complex.WDR12 component


Gene families : OG0005944 (Archaeplastida) Phylogenetic Tree(s): OG0005944_tree ,
OG_05_0007050 (LandPlants) Phylogenetic Tree(s): OG_05_0007050_tree ,
OG_06_0008311 (SeedPlants) Phylogenetic Tree(s): OG_06_0008311_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01032921001
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
AT5G15550 No alias Transducin/WD40 repeat-like superfamily protein 0.08 Archaeplastida
Cpa|evm.model.tig00021428.5 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 Archaeplastida
Cre17.g710100 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
Gb_31445 No alias component WDR12 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.05 Archaeplastida
LOC_Os07g40930.1 No alias component WDR12 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.03 Archaeplastida
MA_27009g0010 No alias Ribosome biogenesis protein WDR12 homolog OS=Oryza... 0.03 Archaeplastida
Mp3g03210.1 No alias component WDR12 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.07 Archaeplastida
Pp3c23_13260V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.07 Archaeplastida
Smo175982 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 Archaeplastida
Solyc02g088780.4.1 No alias component WDR12 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.04 Archaeplastida
Zm00001e035486_P001 No alias component WDR12 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
CC GO:0000313 organellar ribosome IEP Neighborhood
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004177 aminopeptidase activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
CC GO:0005758 mitochondrial intermembrane space IEP Neighborhood
CC GO:0005761 mitochondrial ribosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006825 copper ion transport IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016530 metallochaperone activity IEP Neighborhood
MF GO:0016531 copper chaperone activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0031970 organelle envelope lumen IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
MF GO:0032977 membrane insertase activity IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0034457 Mpp10 complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
MF GO:0042803 protein homodimerization activity IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044452 nucleolar part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
MF GO:0060590 ATPase regulator activity IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 321 346
IPR001680 WD40_repeat 204 237
IPR001680 WD40_repeat 269 304
IPR001680 WD40_repeat 355 392
IPR001680 WD40_repeat 142 187
IPR012972 NLE 14 81
No external refs found!