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  5. GSVIVT01033052001

GSVIVT01033052001


Description : Pentatricopeptide repeat-containing protein At5g14080 OS=Arabidopsis thaliana


Gene families : OG0008070 (Archaeplastida) Phylogenetic Tree(s): OG0008070_tree ,
OG_05_0006659 (LandPlants) Phylogenetic Tree(s): OG_05_0006659_tree ,
OG_06_0004717 (SeedPlants) Phylogenetic Tree(s): OG_06_0004717_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01033052001

Target Alias Description ECC score Gene Family Method Actions
LOC_Os03g56960.1 No alias Pentatricopeptide repeat-containing protein At5g14080... 0.03 Archaeplastida
Solyc02g094310.3.1 No alias Pentatricopeptide repeat-containing protein At5g14080... 0.14 Archaeplastida
Zm00001e009197_P002 No alias Pentatricopeptide repeat-containing protein At5g14080... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003883 CTP synthase activity IEP Neighborhood
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Neighborhood
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Neighborhood
BP GO:0006753 nucleoside phosphate metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009117 nucleotide metabolic process IEP Neighborhood
BP GO:0009165 nucleotide biosynthetic process IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0019637 organophosphate metabolic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
BP GO:0090407 organophosphate biosynthetic process IEP Neighborhood
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 155 184
IPR002885 Pentatricopeptide_repeat 230 253
IPR002885 Pentatricopeptide_repeat 400 445
IPR002885 Pentatricopeptide_repeat 467 515
No external refs found!