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  5. AMTR_s00045p00070890

AMTR_s00045p00070890 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00045.59

Description : Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb1/2/3-type component


Gene families : OG0000035 (Archaeplastida) Phylogenetic Tree(s): OG0000035_tree ,
OG_05_0000162 (LandPlants) Phylogenetic Tree(s): OG_05_0000162_tree ,
OG_06_0000359 (SeedPlants) Phylogenetic Tree(s): OG_06_0000359_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00045p00070890
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AT1G15820 CP24, LHCB6 light harvesting complex photosystem II subunit 6 0.03 Archaeplastida
AT1G29910 CAB3, AB180, LHCB1.2 chlorophyll A/B binding protein 3 0.03 Archaeplastida
AT1G29920 CAB2, AB165, LHCB1.1 chlorophyll A/B-binding protein 2 0.02 Archaeplastida
AT1G29930 LHCB1.3, CAB140,... chlorophyll A/B binding protein 1 0.02 Archaeplastida
AT3G54890 LHCA1 photosystem I light harvesting complex gene 1 0.02 Archaeplastida
Cre06.g278213 No alias Chlorophyll a-b binding protein P4, chloroplastic... 0.03 Archaeplastida
Cre06.g284250 No alias Photosynthesis.photophosphorylation.photosystem... 0.01 Archaeplastida
Cre10.g425900 No alias Chlorophyll a-b binding protein 4, chloroplastic... 0.02 Archaeplastida
Cre10.g452050 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
GSVIVT01028204001 No alias Chlorophyll a-b binding protein 16, chloroplastic... 0.02 Archaeplastida
GSVIVT01030053001 No alias Chlorophyll a-b binding protein 151, chloroplastic... 0.04 Archaeplastida
Gb_00063 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Gb_41161 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
LOC_Os01g41710.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
LOC_Os03g39610.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
LOC_Os06g21590.1 No alias component LHCa1 of LHC-I complex 0.02 Archaeplastida
LOC_Os07g37240.1 No alias component LHCb4 of LHC-II complex 0.02 Archaeplastida
LOC_Os07g38960.1 No alias component LHCa2 of LHC-I complex 0.04 Archaeplastida
LOC_Os08g33820.1 No alias component LHCa4 of LHC-I complex 0.02 Archaeplastida
LOC_Os09g17740.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
LOC_Os11g13890.1 No alias component LHCb5 of LHC-II complex 0.03 Archaeplastida
MA_10431300g0010 No alias Chlorophyll a-b binding protein type I, chloroplastic... 0.02 Archaeplastida
MA_10431300g0020 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
MA_176279g0010 No alias component LHCb5 of LHC-II complex 0.02 Archaeplastida
MA_9388552g0010 No alias Chlorophyll a-b binding protein type 2 member 2... 0.04 Archaeplastida
MA_97315g0010 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Mp1g29620.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp7g05530.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Mp7g05980.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Mp7g06760.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Mp7g08940.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp7g09180.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Pp3c10_25360V3.1 No alias photosystem I light harvesting complex gene 2 0.02 Archaeplastida
Pp3c10_25450V3.1 No alias photosystem I light harvesting complex gene 2 0.04 Archaeplastida
Pp3c10_3020V3.1 No alias photosystem II light harvesting complex gene 2.3 0.03 Archaeplastida
Pp3c12_25430V3.1 No alias light harvesting complex photosystem II 0.03 Archaeplastida
Pp3c13_14980V3.1 No alias photosystem I light harvesting complex gene 1 0.02 Archaeplastida
Pp3c16_16040V3.1 No alias photosystem I light harvesting complex gene 3 0.03 Archaeplastida
Pp3c19_20900V3.1 No alias light-harvesting chlorophyll B-binding protein 3 0.04 Archaeplastida
Pp3c1_34210V3.1 No alias light harvesting complex photosystem II subunit 6 0.03 Archaeplastida
Pp3c1_34240V3.1 No alias light harvesting complex photosystem II subunit 6 0.02 Archaeplastida
Pp3c20_23240V3.1 No alias photosystem I light harvesting complex gene 2 0.04 Archaeplastida
Pp3c21_3950V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 Archaeplastida
Pp3c22_5610V3.1 No alias photosystem II light harvesting complex gene 2.1 0.04 Archaeplastida
Pp3c26_12230V3.1 No alias light harvesting complex of photosystem II 5 0.03 Archaeplastida
Pp3c26_12240V3.1 No alias light harvesting complex of photosystem II 5 0.02 Archaeplastida
Pp3c26_6740V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c27_7010V3.1 No alias photosystem I light harvesting complex gene 3 0.03 Archaeplastida
Pp3c27_7020V3.1 No alias photosystem I light harvesting complex gene 3 0.04 Archaeplastida
Pp3c2_36190V3.1 No alias photosystem II light harvesting complex gene 2.1 0.04 Archaeplastida
Pp3c2_36500V3.1 No alias photosystem II light harvesting complex gene 2.1 0.04 Archaeplastida
Pp3c2_36570V3.1 No alias photosystem II light harvesting complex gene 2.1 0.06 Archaeplastida
Pp3c3_12510V3.1 No alias photosystem I light harvesting complex gene 1 0.04 Archaeplastida
Pp3c4_28370V3.1 No alias light harvesting complex of photosystem II 5 0.02 Archaeplastida
Pp3c4_29150V3.1 No alias photosystem I light harvesting complex gene 1 0.02 Archaeplastida
Pp3c4_29270V3.1 No alias photosystem I light harvesting complex gene 1 0.02 Archaeplastida
Pp3c4_5680V3.1 No alias light harvesting complex photosystem II 0.03 Archaeplastida
Pp3c5_7150V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c6_12510V3.1 No alias photosystem II light harvesting complex gene 2.1 0.04 Archaeplastida
Pp3c6_22090V3.1 No alias photosystem I light harvesting complex gene 3 0.04 Archaeplastida
Smo444370 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Smo446130 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
Smo75552 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Solyc01g105030.3.1 No alias component LHCb6 of LHC-II complex 0.03 Archaeplastida
Solyc01g105050.3.1 No alias component LHCb6 of LHC-II complex 0.02 Archaeplastida
Solyc02g070940.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Solyc02g070950.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Solyc02g070980.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Solyc02g070990.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Solyc02g071010.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Solyc02g071030.2.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Solyc03g005760.1.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Solyc03g005770.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Solyc05g056050.3.1 No alias component LHCa1 of LHC-I complex 0.02 Archaeplastida
Solyc06g069730.3.1 No alias component LHCa4 of LHC-I complex 0.03 Archaeplastida
Solyc07g063600.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Solyc08g067330.1.1 No alias Chlorophyll a-b binding protein 16, chloroplastic... 0.03 Archaeplastida
Solyc12g011280.2.1 No alias component LHCa3 of LHC-I complex 0.02 Archaeplastida
Zm00001e006561_P001 No alias component LHCb6 of LHC-II complex 0.03 Archaeplastida
Zm00001e009885_P001 No alias component LHCa6 of LHC-I complex 0.04 Archaeplastida
Zm00001e020625_P001 No alias Chlorophyll a-b binding protein 48, chloroplastic OS=Zea... 0.02 Archaeplastida
Zm00001e020627_P001 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Zm00001e034922_P001 No alias Chlorophyll a-b binding protein 1, chloroplastic OS=Zea... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 33 198
No external refs found!