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  5. GSVIVT01033246001

GSVIVT01033246001


Description : RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIIb basal transcription factor


Gene families : OG0001457 (Archaeplastida) Phylogenetic Tree(s): OG0001457_tree ,
OG_05_0004318 (LandPlants) Phylogenetic Tree(s): OG_05_0004318_tree ,
OG_06_0005151 (SeedPlants) Phylogenetic Tree(s): OG_06_0005151_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01033246001
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
AT3G10330 No alias Cyclin-like family protein 0.04 Archaeplastida
Cpa|evm.model.tig00000663.43 No alias Transcription initiation factor IIB-2 OS=Arabidopsis thaliana 0.01 Archaeplastida
LOC_Os09g36440.1 No alias basal transcription factor (TFIIb) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0017025 TBP-class protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005984 disaccharide metabolic process IEP Neighborhood
BP GO:0005985 sucrose metabolic process IEP Neighborhood
BP GO:0009311 oligosaccharide metabolic process IEP Neighborhood
MF GO:0016157 sucrose synthase activity IEP Neighborhood
MF GO:0016832 aldehyde-lyase activity IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR013137 Znf_TFIIB 6 47
IPR013150 TFIIB_cyclin 213 281
IPR013150 TFIIB_cyclin 112 176
No external refs found!