GSVIVT01033299001

Description : 40S ribosomal protein S2-4 OS=Arabidopsis thaliana

Gene families : OG0001651 (Archaeplastida) Phylogenetic Tree(s): OG0001651_tree ,
OG_05_0001448 (LandPlants) Phylogenetic Tree(s): OG_05_0001448_tree ,
OG_06_0001471 (SeedPlants) Phylogenetic Tree(s): OG_06_0001471_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01033299001
Cluster	HCCA: Cluster_172

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00212950	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.11	Archaeplastida
AT1G58380	XW6	Ribosomal protein S5 family protein	0.05	Archaeplastida
AT1G58684	No alias	Ribosomal protein S5 family protein	0.09	Archaeplastida
AT1G58983	No alias	Ribosomal protein S5 family protein	0.09	Archaeplastida
AT1G59359	No alias	Ribosomal protein S5 family protein	0.09	Archaeplastida
AT2G41840	No alias	Ribosomal protein S5 family protein	0.21	Archaeplastida
AT3G57490	No alias	Ribosomal protein S5 family protein	0.06	Archaeplastida
Cpa\|evm.model.tig00020961.135	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	Archaeplastida
Cre01.g039250	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	Archaeplastida
Gb_04606	No alias	component RPS2 of SSU proteome	0.03	Archaeplastida
Gb_04608	No alias	component RPS2 of SSU proteome	0.09	Archaeplastida
Gb_04609	No alias	component RPS2 of SSU proteome	0.02	Archaeplastida
LOC_Os03g59310.1	No alias	component RPS2 of SSU proteome	0.14	Archaeplastida
LOC_Os07g10660.1	No alias	component RPS2 of SSU proteome	0.15	Archaeplastida
MA_158470g0010	No alias	component RPS2 of SSU proteome	0.15	Archaeplastida
Mp5g15970.1	No alias	component RPS2 of SSU proteome	0.15	Archaeplastida
Pp3c20_18740V3.1	No alias	Ribosomal protein S5 family protein	0.18	Archaeplastida
Pp3c23_8410V3.1	No alias	Ribosomal protein S5 family protein	0.09	Archaeplastida
Pp3c24_5780V3.1	No alias	Ribosomal protein S5 family protein	0.19	Archaeplastida
Smo67484	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.08	Archaeplastida
Solyc04g063290.3.1	No alias	component RPS2 of SSU proteome	0.15	Archaeplastida
Solyc04g074300.3.1	No alias	component RPS2 of SSU proteome	0.17	Archaeplastida
Zm00001e006090_P001	No alias	component RPS2 of SSU proteome	0.11	Archaeplastida
Zm00001e011816_P001	No alias	component RPS2 of SSU proteome	0.1	Archaeplastida
Zm00001e033091_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003743	translation initiation factor activity	IEP	Neighborhood
MF	GO:0004298	threonine-type endopeptidase activity	IEP	Neighborhood
CC	GO:0005622	intracellular	IEP	Neighborhood
CC	GO:0005759	mitochondrial matrix	IEP	Neighborhood
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Neighborhood
CC	GO:0005839	proteasome core complex	IEP	Neighborhood
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
MF	GO:0008135	translation factor activity, RNA binding	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
CC	GO:0031974	membrane-enclosed lumen	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
CC	GO:0043233	organelle lumen	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044429	mitochondrial part	IEP	Neighborhood
CC	GO:0044432	endoplasmic reticulum part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
MF	GO:0070003	threonine-type peptidase activity	IEP	Neighborhood
CC	GO:0070013	intracellular organelle lumen	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005324	Ribosomal_S5_C	1	57

External Links

No external refs found!

GSVIVT01033299001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation