1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01033428001

GSVIVT01033428001


Description : Spliceosome-associated protein 130 A OS=Arabidopsis thaliana


Gene families : OG0005984 (Archaeplastida) Phylogenetic Tree(s): OG0005984_tree ,
OG_05_0007787 (LandPlants) Phylogenetic Tree(s): OG_05_0007787_tree ,
OG_06_0008854 (SeedPlants) Phylogenetic Tree(s): OG_06_0008854_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01033428001
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
AT3G11960 No alias Cleavage and polyadenylation specificity factor (CPSF) A... 0.06 Archaeplastida
Gb_25386 No alias Spliceosome-associated protein 130 A OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os07g10390.1 No alias DNA damage-binding protein 1a OS=Arabidopsis thaliana... 0.06 Archaeplastida
MA_10432916g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_129261g0030 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_20031g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_8503923g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c24_19520V3.1 No alias Cleavage and polyadenylation specificity factor (CPSF) A... 0.02 Archaeplastida
Smo448595 No alias DNA damage-binding protein 1a OS=Arabidopsis thaliana 0.06 Archaeplastida
Solyc10g080630.2.1 No alias Spliceosome-associated protein 130 A OS=Arabidopsis... 0.07 Archaeplastida
Zm00001e033071_P001 No alias DNA damage-binding protein 1a OS=Arabidopsis thaliana... 0.1 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0043044 ATP-dependent chromatin remodeling IEP Neighborhood
BP GO:0043486 histone exchange IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 1055 1314
No external refs found!