GSVIVT01033430001

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.RRP5 assembly factor

Gene families : OG0004938 (Archaeplastida) Phylogenetic Tree(s): OG0004938_tree ,
OG_05_0007052 (LandPlants) Phylogenetic Tree(s): OG_05_0007052_tree ,
OG_06_0006019 (SeedPlants) Phylogenetic Tree(s): OG_06_0006019_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01033430001
Cluster	HCCA: Cluster_181

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00068p00137340	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.08	Archaeplastida
AT3G11964	No alias	RNA binding;RNA binding	0.25	Archaeplastida
Cpa\|evm.model.tig00000605.10	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	Archaeplastida
Cpa\|evm.model.tig00000605.11	No alias	rRNA biogenesis protein RRP5 OS=Arabidopsis thaliana	0.03	Archaeplastida
Cre10.g428750	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.13	Archaeplastida
Gb_10495	No alias	SSU processome assembly factor (RRP5)	0.03	Archaeplastida
LOC_Os07g10350.1	No alias	SSU processome assembly factor (RRP5)	0.17	Archaeplastida
MA_10425804g0010	No alias	rRNA biogenesis protein RRP5 OS=Arabidopsis thaliana...	0.07	Archaeplastida
MA_10428306g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
Mp1g12810.1	No alias	SSU processome assembly factor (RRP5)	0.1	Archaeplastida
Pp3c4_30330V3.1	No alias	RNA binding;RNA binding	0.1	Archaeplastida
Smo148115	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	Archaeplastida
Solyc03g051900.4.1	No alias	SSU processome assembly factor (RRP5)	0.23	Archaeplastida
Zm00001e033067_P004	No alias	no hits & (original description: none)	0.17	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	Neighborhood
BP	GO:0002098	tRNA wobble uridine modification	IEP	Neighborhood
BP	GO:0002100	tRNA wobble adenosine to inosine editing	IEP	Neighborhood
MF	GO:0003674	molecular_function	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003684	damaged DNA binding	IEP	Neighborhood
MF	GO:0003697	single-stranded DNA binding	IEP	Neighborhood
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	IEP	Neighborhood
MF	GO:0004000	adenosine deaminase activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
CC	GO:0005643	nuclear pore	IEP	Neighborhood
CC	GO:0005730	nucleolus	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006289	nucleotide-excision repair	IEP	Neighborhood
BP	GO:0006351	transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006382	adenosine to inosine editing	IEP	Neighborhood
BP	GO:0006399	tRNA metabolic process	IEP	Neighborhood
BP	GO:0006400	tRNA modification	IEP	Neighborhood
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Neighborhood
BP	GO:0008033	tRNA processing	IEP	Neighborhood
MF	GO:0008134	transcription factor binding	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
MF	GO:0008251	tRNA-specific adenosine deaminase activity	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0008536	Ran GTPase binding	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
BP	GO:0009892	negative regulation of metabolic process	IEP	Neighborhood
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010629	negative regulation of gene expression	IEP	Neighborhood
BP	GO:0016458	gene silencing	IEP	Neighborhood
BP	GO:0016553	base conversion or substitution editing	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	Neighborhood
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Neighborhood
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Neighborhood
MF	GO:0017056	structural constituent of nuclear pore	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
BP	GO:0018130	heterocycle biosynthetic process	IEP	Neighborhood
MF	GO:0019239	deaminase activity	IEP	Neighborhood
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Neighborhood
BP	GO:0031047	gene silencing by RNA	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
BP	GO:0033554	cellular response to stress	IEP	Neighborhood
CC	GO:0033588	Elongator holoenzyme complex	IEP	Neighborhood
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
BP	GO:0097659	nucleic acid-templated transcription	IEP	Neighborhood
MF	GO:0097747	RNA polymerase activity	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003029	S1_domain	757	826
IPR003029	S1_domain	1406	1477
IPR003029	S1_domain	491	555
IPR008847	Suf	1762	1856

External Links

No external refs found!

GSVIVT01033430001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation