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  5. GSVIVT01033580001

GSVIVT01033580001


Description : UPF0481 protein At3g47200 OS=Arabidopsis thaliana


Gene families : OG0000139 (Archaeplastida) Phylogenetic Tree(s): OG0000139_tree ,
OG_05_0000052 (LandPlants) Phylogenetic Tree(s): OG_05_0000052_tree ,
OG_06_0009275 (SeedPlants) Phylogenetic Tree(s): OG_06_0009275_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01033580001
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00068760 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.08 Archaeplastida
AMTR_s00016p00254860 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.08 Archaeplastida
AMTR_s00278p00010750 evm_27.TU.AmTr_v1... No description available 0.05 Archaeplastida
AT2G28580 No alias Plant protein of unknown function (DUF247) 0.06 Archaeplastida
AT2G44930 No alias Plant protein of unknown function (DUF247) 0.07 Archaeplastida
AT3G47200 No alias Plant protein of unknown function (DUF247) 0.04 Archaeplastida
AT3G47210 No alias Plant protein of unknown function (DUF247) 0.03 Archaeplastida
GSVIVT01014791001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01035823001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.12 Archaeplastida
Gb_12420 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os11g33950.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os11g34090.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.07 Archaeplastida
LOC_Os12g29620.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.05 Archaeplastida
LOC_Os12g29650.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.07 Archaeplastida
MA_26069g0010 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.04 Archaeplastida
MA_6919317g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc01g057260.4.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc03g078830.1.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Solyc04g016030.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc04g019313.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc10g079520.1.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.1 Archaeplastida
Solyc10g079530.2.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc12g099300.1.1 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Zm00001e023471_P002 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Zm00001e024232_P001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
InterPro domains Description Start Stop
IPR004158 DUF247_pln 86 461
No external refs found!