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  5. GSVIVT01033622001

GSVIVT01033622001


Description : RNA processing.RNA decay.Nonsense-Mediated mRNA Decay (NMD).SMG7 protein


Gene families : OG0002555 (Archaeplastida) Phylogenetic Tree(s): OG0002555_tree ,
OG_05_0002119 (LandPlants) Phylogenetic Tree(s): OG_05_0002119_tree ,
OG_06_0006148 (SeedPlants) Phylogenetic Tree(s): OG_06_0006148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01033622001
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00170580 evm_27.TU.AmTr_v1... RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.03 Archaeplastida
AT5G19400 SMG7 Telomerase activating protein Est1 0.03 Archaeplastida
Cre16.g648750 No alias Protein SMG7 OS=Arabidopsis thaliana 0.02 Archaeplastida
Gb_21699 No alias SMG7 Nonsense-Mediated mRNA Decay protein 0.02 Archaeplastida
LOC_Os08g21350.1 No alias SMG7 Nonsense-Mediated mRNA Decay protein 0.07 Archaeplastida
MA_32980g0010 No alias Protein SMG7 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Pp3c11_18290V3.1 No alias Telomerase activating protein Est1 0.02 Archaeplastida
Smo410159 No alias RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.06 Archaeplastida
Solyc12g019960.2.1 No alias SMG7 Nonsense-Mediated mRNA Decay protein 0.03 Archaeplastida
Zm00001e009613_P002 No alias SMG7 Nonsense-Mediated mRNA Decay protein 0.05 Archaeplastida
Zm00001e033654_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0005092 GDP-dissociation inhibitor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0007264 small GTPase mediated signal transduction IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0043044 ATP-dependent chromatin remodeling IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043486 histone exchange IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR019458 EST1 70 192
IPR018834 DNA/RNA-bd_Est1-type 206 540
No external refs found!