GSVIVT01033712001

Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase

Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0002817 (LandPlants) Phylogenetic Tree(s): OG_05_0002817_tree ,
OG_06_0001835 (SeedPlants) Phylogenetic Tree(s): OG_06_0001835_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01033712001
Cluster	HCCA: Cluster_9

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00056p00166920	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
AT2G36710	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT5G55590	QRT1	Pectin lyase-like superfamily protein	0.02	Archaeplastida
LOC_Os05g44600.1	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os11g45720.1	No alias	pectin methylesterase	0.02	Archaeplastida
MA_10434773g0030	No alias	pectin methylesterase	0.03	Archaeplastida
MA_6780346g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
Pp3c3_30560V3.1	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
Pp3c3_32350V3.1	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
Pp3c5_12660V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Smo81583	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
Solyc07g043240.4.1	No alias	pectin methylesterase	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004180	carboxypeptidase activity	None	Extended
MF	GO:0004185	serine-type carboxypeptidase activity	IEA	Interproscan
BP	GO:0006508	proteolysis	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008236	serine-type peptidase activity	None	Extended
MF	GO:0008238	exopeptidase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0017171	serine hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0070008	serine-type exopeptidase activity	None	Extended
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004519	endonuclease activity	IEP	Neighborhood
BP	GO:0006308	DNA catabolic process	IEP	Neighborhood
BP	GO:0006813	potassium ion transport	IEP	Neighborhood
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Neighborhood
BP	GO:0009308	amine metabolic process	IEP	Neighborhood
BP	GO:0009690	cytokinin metabolic process	IEP	Neighborhood
BP	GO:0010817	regulation of hormone levels	IEP	Neighborhood
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	Neighborhood
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Neighborhood
MF	GO:0019139	cytokinin dehydrogenase activity	IEP	Neighborhood
BP	GO:0034754	cellular hormone metabolic process	IEP	Neighborhood
BP	GO:0042445	hormone metabolic process	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
BP	GO:0071804	cellular potassium ion transport	IEP	Neighborhood
BP	GO:0071805	potassium ion transmembrane transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	106	395
IPR001563	Peptidase_S10	464	885

External Links

No external refs found!