1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01033801001

GSVIVT01033801001


Description : Carbohydrate metabolism.starch metabolism.synthesis.starch branching enzyme


Gene families : OG0001006 (Archaeplastida) Phylogenetic Tree(s): OG0001006_tree ,
OG_05_0002115 (LandPlants) Phylogenetic Tree(s): OG_05_0002115_tree ,
OG_06_0006934 (SeedPlants) Phylogenetic Tree(s): OG_06_0006934_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01033801001
Cluster HCCA: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
AT2G36390 SBE2.1, BE3 starch branching enzyme 2.1 0.07 Archaeplastida
AT5G03650 SBE2.2 starch branching enzyme 2.2 0.12 Archaeplastida
Cpa|evm.model.tig00000981.14 No alias Carbohydrate metabolism.starch... 0.01 Archaeplastida
Cre06.g289850 No alias Carbohydrate metabolism.starch... 0.02 Archaeplastida
Cre10.g444700 No alias Carbohydrate metabolism.starch... 0.03 Archaeplastida
GSVIVT01008673001 No alias Carbohydrate metabolism.starch... 0.1 Archaeplastida
Gb_33676 No alias starch branching enzyme 0.06 Archaeplastida
LOC_Os02g32660.1 No alias starch branching enzyme 0.02 Archaeplastida
LOC_Os06g51084.1 No alias starch branching enzyme 0.02 Archaeplastida
MA_10431704g0010 No alias 1,4-alpha-glucan-branching enzyme 2-2,... 0.03 Archaeplastida
MA_15024g0020 No alias 1,4-alpha-glucan-branching enzyme 1,... 0.13 Archaeplastida
Pp3c27_2570V3.1 No alias starch branching enzyme 2.1 0.02 Archaeplastida
Pp3c5_8810V3.1 No alias starch branching enzyme 2.1 0.03 Archaeplastida
Solyc04g082400.3.1 No alias starch branching enzyme 0.02 Archaeplastida
Solyc09g009190.4.1 No alias starch branching enzyme 0.04 Archaeplastida
Zm00001e013321_P002 No alias starch branching enzyme 0.06 Archaeplastida
Zm00001e014711_P001 No alias starch branching enzyme 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Neighborhood
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0004645 phosphorylase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
MF GO:0008184 glycogen phosphorylase activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
BP GO:0016052 carbohydrate catabolic process IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016161 beta-amylase activity IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood
InterPro domains Description Start Stop
IPR006048 A-amylase/branching_C 756 850
IPR004193 Glyco_hydro_13_N 218 301
IPR006047 Glyco_hydro_13_cat_dom 367 440
No external refs found!