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  5. GSVIVT01033837001

GSVIVT01033837001


Description : Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000064 (SeedPlants) Phylogenetic Tree(s): OG_06_0000064_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01033837001
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00182540 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.04 Archaeplastida
AMTR_s00004p00087070 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00009p00268260 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
AMTR_s00029p00235510 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.06 Archaeplastida
AMTR_s00058p00187000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33760... 0.04 Archaeplastida
AMTR_s00103p00160020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
AT1G77010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT2G01510 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT2G39620 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT3G05240 MEF19 mitochondrial editing factor 19 0.04 Archaeplastida
AT3G13770 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Archaeplastida
AT3G26782 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT4G18520 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT4G33170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Archaeplastida
AT5G08305 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.09 Archaeplastida
AT5G08490 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT5G39680 EMB2744 Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
AT5G47460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
GSVIVT01000072001 No alias Pentatricopeptide repeat-containing protein At3g05340... 0.05 Archaeplastida
GSVIVT01003453001 No alias RNA processing.organelle machineries.RNA... 0.08 Archaeplastida
GSVIVT01017075001 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.06 Archaeplastida
GSVIVT01028697001 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.08 Archaeplastida
GSVIVT01035837001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.05 Archaeplastida
Gb_02038 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 Archaeplastida
Gb_02379 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.07 Archaeplastida
Gb_02808 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
Gb_03263 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.07 Archaeplastida
Gb_03545 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.04 Archaeplastida
Gb_04828 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
Gb_04844 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_04894 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Archaeplastida
Gb_05942 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_06115 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
Gb_11925 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_12240 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
Gb_12554 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_15874 No alias RNA editing factor (ECB2/VAC1) 0.04 Archaeplastida
Gb_17077 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 Archaeplastida
Gb_17177 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_17321 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_18015 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.06 Archaeplastida
Gb_19040 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
Gb_20488 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_21049 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_21555 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_21824 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_22996 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.06 Archaeplastida
Gb_26155 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
Gb_27926 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.09 Archaeplastida
Gb_28038 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
Gb_30097 No alias RNA editing factor (CRR21) 0.04 Archaeplastida
Gb_32439 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
Gb_32450 No alias RNA editing factor (CRR21) 0.04 Archaeplastida
Gb_32455 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_33328 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_33726 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_36434 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Gb_37254 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.07 Archaeplastida
Gb_38249 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
LOC_Os01g01115.1 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
LOC_Os01g60000.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.03 Archaeplastida
LOC_Os02g06880.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.06 Archaeplastida
LOC_Os02g07050.1 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.04 Archaeplastida
LOC_Os03g64370.1 No alias Pentatricopeptide repeat-containing protein At5g52850,... 0.03 Archaeplastida
LOC_Os04g35650.1 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.05 Archaeplastida
LOC_Os06g27790.1 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
MA_10429069g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_10429540g0020 No alias Pentatricopeptide repeat-containing protein At4g14850... 0.08 Archaeplastida
MA_109134g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_117676g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_39801g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
MA_41676g0020 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.04 Archaeplastida
MA_46875g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
MA_724726g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_794605g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_8210920g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
MA_83898g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
MA_87646g0010 No alias RNA editing factor (MEF13) 0.04 Archaeplastida
MA_8868720g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_9354530g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Solyc01g006920.4.1 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.06 Archaeplastida
Solyc01g090510.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.08 Archaeplastida
Solyc01g091610.1.1 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 Archaeplastida
Solyc01g099000.1.1 No alias Pentatricopeptide repeat-containing protein At3g05340... 0.05 Archaeplastida
Solyc01g100790.1.1 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.05 Archaeplastida
Solyc02g005280.1.1 No alias Pentatricopeptide repeat-containing protein At1g50270... 0.04 Archaeplastida
Solyc02g065030.1.1 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.06 Archaeplastida
Solyc02g065410.3.1 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.05 Archaeplastida
Solyc02g068630.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.08 Archaeplastida
Solyc03g063690.1.1 No alias RNA editing factor (MEF1) 0.08 Archaeplastida
Solyc03g082830.2.1 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
Solyc03g093630.3.1 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.09 Archaeplastida
Solyc03g097850.1.1 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.07 Archaeplastida
Solyc03g115790.1.1 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.1 Archaeplastida
Solyc03g120460.4.1 No alias No annotation 0.06 Archaeplastida
Solyc04g009210.1.1 No alias Pentatricopeptide repeat-containing protein At5g08305... 0.04 Archaeplastida
Solyc04g063300.3.1 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.04 Archaeplastida
Solyc04g082870.1.1 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.04 Archaeplastida
Solyc05g012630.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Solyc06g062610.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Solyc06g066080.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.05 Archaeplastida
Solyc06g069700.4.1 No alias Pentatricopeptide repeat-containing protein At5g61400... 0.07 Archaeplastida
Solyc06g082880.2.1 No alias RNA editing factor (MEF13) 0.1 Archaeplastida
Solyc06g084580.1.1 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.07 Archaeplastida
Solyc07g006990.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Solyc07g009220.2.1 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.06 Archaeplastida
Solyc07g042760.1.1 No alias Pentatricopeptide repeat-containing protein At4g31070,... 0.1 Archaeplastida
Solyc07g055310.1.1 No alias Pentatricopeptide repeat-containing protein At2g41080... 0.06 Archaeplastida
Solyc07g062820.1.1 No alias RNA editing factor (SEL1/PDM1) 0.03 Archaeplastida
Solyc08g023640.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.07 Archaeplastida
Solyc08g078570.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.09 Archaeplastida
Solyc09g009790.4.1 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Solyc09g009950.4.1 No alias RNA editing factor (MEF10) 0.04 Archaeplastida
Solyc09g010070.1.1 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.13 Archaeplastida
Solyc09g075170.1.1 No alias Pentatricopeptide repeat-containing protein At3g62890... 0.04 Archaeplastida
Solyc09g082400.2.1 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.07 Archaeplastida
Solyc10g080220.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
Solyc11g005960.1.1 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.1 Archaeplastida
Solyc11g007230.1.1 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.08 Archaeplastida
Solyc11g008970.1.1 No alias Pentatricopeptide repeat-containing protein At4g39952,... 0.05 Archaeplastida
Solyc11g017290.1.1 No alias Pentatricopeptide repeat-containing protein At1g31430... 0.05 Archaeplastida
Solyc11g065250.1.1 No alias Pentatricopeptide repeat-containing protein At5g39680... 0.04 Archaeplastida
Solyc11g067210.1.1 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.08 Archaeplastida
Solyc12g099620.1.1 No alias Pentatricopeptide repeat-containing protein At4g32430,... 0.12 Archaeplastida
Zm00001e000523_P001 No alias Pentatricopeptide repeat-containing protein At5g15300... 0.06 Archaeplastida
Zm00001e002505_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e005246_P001 No alias Pentatricopeptide repeat-containing protein At2g41080... 0.05 Archaeplastida
Zm00001e007600_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
Zm00001e010837_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.04 Archaeplastida
Zm00001e012607_P002 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e013531_P001 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.06 Archaeplastida
Zm00001e018565_P001 No alias Pentatricopeptide repeat-containing protein At3g13880... 0.06 Archaeplastida
Zm00001e019482_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.04 Archaeplastida
Zm00001e033335_P001 No alias Pentatricopeptide repeat-containing protein At5g61800... 0.05 Archaeplastida
Zm00001e035616_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e035764_P001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.04 Archaeplastida
Zm00001e036647_P001 No alias Pentatricopeptide repeat-containing protein At5g08510... 0.05 Archaeplastida
Zm00001e037600_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Zm00001e038629_P001 No alias no hits & (original description: none) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 85 104
IPR002885 Pentatricopeptide_repeat 383 407
IPR002885 Pentatricopeptide_repeat 283 305
IPR002885 Pentatricopeptide_repeat 108 136
IPR002885 Pentatricopeptide_repeat 207 256
IPR002885 Pentatricopeptide_repeat 5 52
IPR002885 Pentatricopeptide_repeat 308 356
IPR032867 DYW_dom 482 605
No external refs found!