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  5. AMTR_s00045p00114550

AMTR_s00045p00114550 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00045.110

Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.CFM3-type splicing factor


Gene families : OG0000748 (Archaeplastida) Phylogenetic Tree(s): OG0000748_tree ,
OG_05_0000737 (LandPlants) Phylogenetic Tree(s): OG_05_0000737_tree ,
OG_06_0001068 (SeedPlants) Phylogenetic Tree(s): OG_06_0001068_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00045p00114550
Cluster HCCA: Cluster_246

Target Alias Description ECC score Gene Family Method Actions
AT3G01370 ATCFM2, CFM2 CRM family member 2 0.05 Archaeplastida
AT3G18390 EMB1865 CRS1 / YhbY (CRM) domain-containing protein 0.05 Archaeplastida
AT3G23070 ATCFM3A, CFM3A CRM family member 3A 0.09 Archaeplastida
AT4G14510 ATCFM3B, CFM3B CRM family member 3B 0.04 Archaeplastida
AT4G29750 No alias CRS1 / YhbY (CRM) domain-containing protein 0.08 Archaeplastida
GSVIVT01008296001 No alias CRM-domain containing factor CFM3,... 0.04 Archaeplastida
GSVIVT01015193001 No alias RNA processing.organelle machineries.RNA... 0.06 Archaeplastida
GSVIVT01018109001 No alias RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
GSVIVT01032542001 No alias RNA processing.organelle machineries.RNA... 0.06 Archaeplastida
Gb_18301 No alias CRM-domain containing factor CFM2, chloroplastic... 0.04 Archaeplastida
Gb_18302 No alias CRM-domain containing factor CFM2, chloroplastic... 0.03 Archaeplastida
Gb_18303 No alias CRM-domain containing factor CFM2, chloroplastic... 0.04 Archaeplastida
Gb_37638 No alias CFM2-type plastidial RNA splicing factor. CFM3-type... 0.04 Archaeplastida
Gb_39217 No alias CFM2-type plastidial RNA splicing factor 0.02 Archaeplastida
LOC_Os04g39060.2 No alias CRM-domain containing factor CFM2, chloroplastic... 0.03 Archaeplastida
LOC_Os05g47850.1 No alias CRM-domain containing factor CFM3,... 0.03 Archaeplastida
LOC_Os09g19850.1 No alias CRM-domain containing factor CFM3,... 0.03 Archaeplastida
MA_10233916g0010 No alias CRM-domain containing factor CFM2, chloroplastic... 0.06 Archaeplastida
MA_10432072g0010 No alias CFM2-type plastidial RNA splicing factor 0.03 Archaeplastida
MA_10435740g0010 No alias CFM2-type plastidial RNA splicing factor 0.04 Archaeplastida
MA_8161870g0010 No alias CRM-domain containing factor CFM2, chloroplastic... 0.05 Archaeplastida
Mp3g06280.1 No alias CRM-domain containing factor CFM3,... 0.02 Archaeplastida
Pp3c12_15870V3.1 No alias CRM family member 2 0.04 Archaeplastida
Pp3c13_17270V3.1 No alias CRM family member 2 0.06 Archaeplastida
Smo120007 No alias CRM-domain containing factor CFM3,... 0.03 Archaeplastida
Smo412905 No alias CRM-domain containing factor CFM3,... 0.03 Archaeplastida
Solyc03g119450.3.1 No alias CRM-domain containing factor CFM3,... 0.04 Archaeplastida
Solyc07g039500.4.1 No alias CRM-domain containing factor CFM3,... 0.04 Archaeplastida
Solyc09g083350.3.1 No alias CFM3-type plastidial RNA splicing factor 0.04 Archaeplastida
Zm00001e011272_P001 No alias CFM3-type plastidial RNA splicing factor 0.03 Archaeplastida
Zm00001e032339_P002 No alias CRM-domain containing factor CFM3,... 0.03 Archaeplastida
Zm00001e033939_P001 No alias CRM-domain containing factor CFM3,... 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004832 valine-tRNA ligase activity IEP Neighborhood
MF GO:0004888 transmembrane signaling receptor activity IEP Neighborhood
MF GO:0004970 ionotropic glutamate receptor activity IEP Neighborhood
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Neighborhood
MF GO:0005231 excitatory extracellular ligand-gated ion channel activity IEP Neighborhood
MF GO:0005234 extracellularly glutamate-gated ion channel activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006438 valyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008066 glutamate receptor activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0015276 ligand-gated ion channel activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
MF GO:0022824 transmitter-gated ion channel activity IEP Neighborhood
MF GO:0022834 ligand-gated channel activity IEP Neighborhood
MF GO:0022835 transmitter-gated channel activity IEP Neighborhood
MF GO:0022839 ion gated channel activity IEP Neighborhood
CC GO:0030288 outer membrane-bounded periplasmic space IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030594 neurotransmitter receptor activity IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0038023 signaling receptor activity IEP Neighborhood
CC GO:0042597 periplasmic space IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 476 555
IPR001890 RNA-binding_CRM 885 972
IPR001890 RNA-binding_CRM 672 756
No external refs found!