Description : Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana
Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00129p00082590 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g19720... | 0.03 | Archaeplastida | |
AT5G08305 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Archaeplastida | |
GSVIVT01036393001 | No alias | Pentatricopeptide repeat-containing protein At1g71490... | 0.02 | Archaeplastida | |
LOC_Os05g24150.1 | No alias | Pentatricopeptide repeat-containing protein At2g34400... | 0.02 | Archaeplastida | |
LOC_Os05g38190.2 | No alias | Pentatricopeptide repeat-containing protein At2g27610... | 0.01 | Archaeplastida | |
LOC_Os07g10400.1 | No alias | Pentatricopeptide repeat-containing protein At1g11290,... | 0.07 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003909 | DNA ligase activity | IEP | Neighborhood |
MF | GO:0003910 | DNA ligase (ATP) activity | IEP | Neighborhood |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006259 | DNA metabolic process | IEP | Neighborhood |
BP | GO:0006281 | DNA repair | IEP | Neighborhood |
BP | GO:0006310 | DNA recombination | IEP | Neighborhood |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
BP | GO:0006950 | response to stress | IEP | Neighborhood |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Neighborhood |
MF | GO:0016874 | ligase activity | IEP | Neighborhood |
MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | Neighborhood |
BP | GO:0033554 | cellular response to stress | IEP | Neighborhood |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
BP | GO:0050896 | response to stimulus | IEP | Neighborhood |
BP | GO:0051716 | cellular response to stimulus | IEP | Neighborhood |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Neighborhood |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 628 | 653 |
IPR002885 | Pentatricopeptide_repeat | 427 | 456 |
IPR002885 | Pentatricopeptide_repeat | 145 | 174 |
IPR032867 | DYW_dom | 727 | 851 |
IPR002885 | Pentatricopeptide_repeat | 553 | 600 |
IPR002885 | Pentatricopeptide_repeat | 223 | 271 |
IPR002885 | Pentatricopeptide_repeat | 323 | 370 |
No external refs found! |