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  5. AMTR_s00045p00123650

AMTR_s00045p00123650 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00045.120

Description : Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.RBD1 protein


Gene families : OG0006628 (Archaeplastida) Phylogenetic Tree(s): OG0006628_tree ,
OG_05_0008310 (LandPlants) Phylogenetic Tree(s): OG_05_0008310_tree ,
OG_06_0010591 (SeedPlants) Phylogenetic Tree(s): OG_06_0010591_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00045p00123650
Cluster HCCA: Cluster_227

Target Alias Description ECC score Gene Family Method Actions
AT1G54500 No alias Rubredoxin-like superfamily protein 0.06 Archaeplastida
Cpa|evm.model.tig00020912.23 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Cre07.g315150 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
LOC_Os08g23410.1 No alias RBD1 protein involved in PS-II assembly 0.05 Archaeplastida
Mp5g13990.1 No alias RBD1 protein involved in PS-II assembly 0.02 Archaeplastida
Pp3c1_22450V3.1 No alias Rubredoxin-like superfamily protein 0.03 Archaeplastida
Solyc01g097910.2.1 No alias RBD1 protein involved in PS-II assembly 0.02 Archaeplastida
Zm00001e006086_P001 No alias RBD1 protein involved in PS-II assembly 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR024935 Rubredoxin_dom 137 182
No external refs found!