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Description : RNA processing.organelle machineries.ribonuclease activities.RNase R exoribonuclease
Gene families : OG0005570 (Archaeplastida) Phylogenetic Tree(s): OG0005570_tree ,
OG_05_0007028 (LandPlants) Phylogenetic Tree(s): OG_05_0007028_tree ,
OG_06_0009663 (SeedPlants) Phylogenetic Tree(s): OG_06_0009663_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01034161001 | |
| Cluster | HCCA: Cluster_155 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Gb_33852 | No alias | exoribonuclease (RNase R) | 0.08 | Archaeplastida | |
| Gb_33853 | No alias | exoribonuclease (RNase R) | 0.03 | Archaeplastida | |
| LOC_Os01g62440.1 | No alias | exoribonuclease (RNase R) | 0.05 | Archaeplastida | |
| MA_10437077g0010 | No alias | exoribonuclease (RNase R) | 0.04 | Archaeplastida | |
| Mp3g07060.1 | No alias | exoribonuclease (RNase R) | 0.06 | Archaeplastida | |
| Smo145357 | No alias | RNA processing.organelle machineries.ribonuclease... | 0.04 | Archaeplastida | |
| Solyc09g010870.4.1 | No alias | exoribonuclease (RNase R) | 0.09 | Archaeplastida | |
| Zm00001e019318_P002 | No alias | exoribonuclease (RNase R) | 0.04 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEA | Interproscan |
| MF | GO:0004540 | ribonuclease activity | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0001871 | pattern binding | IEP | Neighborhood |
| MF | GO:0004645 | phosphorylase activity | IEP | Neighborhood |
| BP | GO:0008033 | tRNA processing | IEP | Neighborhood |
| MF | GO:0008184 | glycogen phosphorylase activity | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| BP | GO:0009116 | nucleoside metabolic process | IEP | Neighborhood |
| BP | GO:0009119 | ribonucleoside metabolic process | IEP | Neighborhood |
| BP | GO:0015969 | guanosine tetraphosphate metabolic process | IEP | Neighborhood |
| MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | Neighborhood |
| MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | Neighborhood |
| MF | GO:0030247 | polysaccharide binding | IEP | Neighborhood |
| BP | GO:0033865 | nucleoside bisphosphate metabolic process | IEP | Neighborhood |
| BP | GO:0033875 | ribonucleoside bisphosphate metabolic process | IEP | Neighborhood |
| BP | GO:0034032 | purine nucleoside bisphosphate metabolic process | IEP | Neighborhood |
| BP | GO:0034035 | purine ribonucleoside bisphosphate metabolic process | IEP | Neighborhood |
| BP | GO:0042278 | purine nucleoside metabolic process | IEP | Neighborhood |
| MF | GO:0043167 | ion binding | IEP | Neighborhood |
| BP | GO:0046128 | purine ribonucleoside metabolic process | IEP | Neighborhood |
| MF | GO:0046914 | transition metal ion binding | IEP | Neighborhood |
| MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | Neighborhood |
| MF | GO:0070569 | uridylyltransferase activity | IEP | Neighborhood |
| MF | GO:0071949 | FAD binding | IEP | Neighborhood |
| BP | GO:1901068 | guanosine-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:1901657 | glycosyl compound metabolic process | IEP | Neighborhood |
| MF | GO:2001070 | starch binding | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |