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  5. GSVIVT01034188001

GSVIVT01034188001


Description : RNA processing.RNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex.Nap57/CBF5 pseudouridine synthase component


Gene families : OG0004601 (Archaeplastida) Phylogenetic Tree(s): OG0004601_tree ,
OG_05_0004875 (LandPlants) Phylogenetic Tree(s): OG_05_0004875_tree ,
OG_06_0005456 (SeedPlants) Phylogenetic Tree(s): OG_06_0005456_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01034188001
Cluster HCCA: Cluster_236

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00253700 evm_27.TU.AmTr_v1... RNA processing.RNA modification.pseudouridylation.H/ACA... 0.04 Archaeplastida
AT3G57150 CBF5, AtCBF5,... homologue of NAP57 0.04 Archaeplastida
Cpa|evm.model.tig00000553.10 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.04 Archaeplastida
Cre03.g172950 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.05 Archaeplastida
Gb_32372 No alias pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.05 Archaeplastida
Gb_34541 No alias pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.05 Archaeplastida
MA_27456g0030 No alias pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.09 Archaeplastida
Mp4g12650.1 No alias pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.05 Archaeplastida
Pp3c22_210V3.1 No alias homologue of NAP57 0.04 Archaeplastida
Smo81986 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.05 Archaeplastida
Solyc02g081810.4.1 No alias pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.09 Archaeplastida
Zm00001e017259_P001 No alias pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.06 Archaeplastida
Zm00001e025570_P001 No alias pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.07 Archaeplastida
Zm00001e035655_P001 No alias pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002478 PUA 233 305
IPR012960 Dyskerin-like 52 109
IPR032819 TruB_C 178 229
No external refs found!