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  5. GSVIVT01034555001

GSVIVT01034555001


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL3 component


Gene families : OG0002284 (Archaeplastida) Phylogenetic Tree(s): OG0002284_tree ,
OG_05_0002131 (LandPlants) Phylogenetic Tree(s): OG_05_0002131_tree ,
OG_06_0002300 (SeedPlants) Phylogenetic Tree(s): OG_06_0002300_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01034555001
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00269670 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 Archaeplastida
AMTR_s00060p00174830 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
AMTR_s00135p00091990 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 Archaeplastida
AT1G43170 RP1, RPL3A, emb2207, ARP1 ribosomal protein 1 0.2 Archaeplastida
AT1G61580 RPL3B, ARP2 R-protein L3 B 0.03 Archaeplastida
Cpa|evm.model.tig00000025.50 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.23 Archaeplastida
Cre10.g417700 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
Gb_35746 No alias component RPL3 of LSU proteome component 0.12 Archaeplastida
LOC_Os11g06750.1 No alias component RPL3 of LSU proteome component 0.23 Archaeplastida
LOC_Os12g07010.1 No alias component RPL3 of LSU proteome component 0.3 Archaeplastida
MA_10432758g0010 No alias component RPL3 of LSU proteome component 0.15 Archaeplastida
MA_124178g0010 No alias component RPL3 of LSU proteome component 0.13 Archaeplastida
Mp1g18990.1 No alias component RPL3 of LSU proteome component 0.31 Archaeplastida
Pp3c10_25460V3.1 No alias R-protein L3 B 0.09 Archaeplastida
Pp3c5_27000V3.1 No alias R-protein L3 B 0.05 Archaeplastida
Pp3c5_27030V3.1 No alias R-protein L3 B 0.11 Archaeplastida
Smo270706 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 Archaeplastida
Solyc01g104590.3.1 No alias component RPL3 of LSU proteome component 0.3 Archaeplastida
Zm00001e001224_P002 No alias component RPL3 of LSU proteome component 0.16 Archaeplastida
Zm00001e008122_P001 No alias component RPL3 of LSU proteome component 0.14 Archaeplastida
Zm00001e008127_P001 No alias component RPL3 of LSU proteome component 0.19 Archaeplastida
Zm00001e009061_P001 No alias component RPL3 of LSU proteome component 0.19 Archaeplastida
Zm00001e009065_P002 No alias component RPL3 of LSU proteome component 0.26 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006547 histidine metabolic process IEP Neighborhood
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Neighborhood
BP GO:0009072 aromatic amino acid family metabolic process IEP Neighborhood
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Neighborhood
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0052803 imidazole-containing compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000597 Ribosomal_L3 61 430
No external refs found!